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                  <text>Colorado Division of Parks and Wildlife
July 2013-June 2014

WILDLIFE RESEARCH REPORT
State of:
Cost Center:
Work Package:
Task No.:

Colorado
3420
1680
N/A

Federal Aid
Project No.

N/A

:
:
:
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Division of Parks and Wildlife
Avian Research
Bird Conservation
Avian response to plague management on Colorado
prairie dog colonies

Period Covered: September 1, 2013 – August 31, 2014
Author: R. Yale Conrey
Personnel: D. Tripp, J. Gammonley, CPW; A. Panjabi, E. Youngberg, Rocky Mountain Bird Observatory.
All information in this report is preliminary and subject to further evaluation. Information MAY
NOT BE PUBLISHED OR QUOTED without permission of the author. Manipulation of these data
beyond that contained in this report is discouraged.
ABSTRACT
Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and the largest
limiting factor in recent decades appears to be the high mortality and colony extirpation associated with
plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Prairie dog colonies support a
diverse community of associated species, many of which are not susceptible to plague but may be
indirectly affected. In order to conserve prairie dogs and species associated with their colonies, principally
the black-footed ferret (Mustela nigripes), a plague vaccination program is being developed, which may
also benefit a suite of species listed in the Conservation Plan for Grassland Species in Colorado (Colorado
Division of Wildlife 2003) and the Colorado Sagebrush Conservation Assessment and Strategy (Boyle
and Reeder 2005). In Colorado, CPW researchers led by Dan Tripp are surveying colonies before and
after bait distribution and conducting a mark-recapture study of prairie dogs and associated small
mammal species. As an extension to this project, we initiated research in 2013 on the effects of plague
management on avian species associated with prairie dog colonies, with particular focus on species of
concern. The 2014 season was the second of three study seasons. We collected the first year of posttreatment data and continued investigating whether avian species associations exist for colonies of
Gunnison’s prairie dogs (Cynomys gunnisoni: GUPD); most evidence for associated species comes from
black-tailed prairie dogs (C. ludovicianus: BTPD). Since fall 2013, plague epizootics have occurred on
one GUPD colony and across half the BTPD study area at four treatment sites and five additional
colonies. In September and October 2014, black-footed ferrets were released in three BTPD study
colonies, one of which was only 0.5 km from the nearest baited site, which experienced a plague epizootic
in fall 2013. In 2014, we detected 95 bird species, with 113 total bird species detected over two seasons,
half of which were unique to on- or off-colony sites. We documented 175 plant species in two years, half
of which were unique to either BTPD or GUPD sites. Colonies contained a much higher bare ground
component with lower vegetation height (heights were similar on- and off-colony in 2013) than off-

1

�colony sites, with shortgrasses dominant at BTPD sites and a more even distribution of plant types at
GUPD sites. We detected 13 raptor species during counts. Burrowing owls, northern harriers, ferruginous
hawks, prairie falcons, and rough-legged hawks have been detected only on prairie dog colonies (the
latter three, only on BTPD colonies, where no off-colony counts were performed). It is unclear whether
golden eagles and American kestrels have a higher level of use on- versus off-GUPD colonies, as a strong
relationship existed in one year but not the other. Apparent nest success was 47% in 2014 compared to
53% in 2013, with most of the decrease attributable to hail storms and flooding at BTPD sites. An
increase in nest numbers was partly due to increased effort and partly to a huge influx of lark buntings
during a wet year. We monitored 68 nests of 11 species in 2013 and 225 nests of 15 species in 2014. Our
remote camera photos have documented use of vaccine project areas by coyote, badger, fox, and several
other carnivores. Overall 4-week carnivore detection rates for May 2013 – April 2014 (naïve occupancy
estimates) ranged from 7% for swift fox on BTPD colonies to 54% for coyotes on GUPD colonies. This
was the first year of post-treatment data collection on the project, and it will likely take additional years of
monitoring to detect potential changes in the avian community caused by plague management, as treated
colonies no longer experience extinction events. Thus far, data from vegetation surveys have identified
differences between on- and off-colony areas for GUPD sites, but bird data will require further analysis
and a third year of data before we draw conclusions regarding the uniqueness of the avian community on
GUPD colonies. Work will continue in 2015.

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�COLORADO PARKS AND WILDLIFE RESEARCH REPORT
AVIAN RESPONSE TO PLAGUE MANAGEMENT ON COLORADO PRAIRIE DOG
COLONIES
REESA C. YALE CONREY
PROJECT OBJECTIVES
The main long-term objective is to determine whether areas treated to control plague differ from
untreated areas in their avian communities. Over time, avian communities on vaccinated prairie dog
colonies may differ from those on dusted colonies or those with continued exposure to plague. Shorterterm objectives are to:
1. Determine whether avian species associations exist for Gunnison’s prairie dog colonies.
2. Determine whether insecticidal dusting influences bird density or nest survival.
3. Evaluate response of avian community to other land management that may occur on study areas, such
as cattle grazing or flood irrigation.
SEGMENT OBJECTIVES
This was the second year of data collection and the first year of post-treatment data collection.
Specific objectives for 2014 included: 1) Improve protocols. 2) Conduct avian point counts and
vegetation surveys at points on and off colonies. 3) Sample vegetation on transects on and off colonies. 4)
Quantify use of on- and off-colony sites by breeding and wintering raptors. 5) Find and monitor success
of nests for passerines, mountain plover, burrowing owls, and other raptors; characterize vegetation at
nests on colonies. 6) Sample carnivores using remote cameras on colonies.
INTRODUCTION
Wildlife diseases are important to conservation and population dynamics of susceptible species
and may also have large indirect effects on non-susceptible species (Antolin et al. 2002). Introduced
pathogens have the potential for far-reaching effects on native ecosystems that go beyond the mortality of
infected individuals, particularly when a keystone species (Paine 1969) or ecosystem engineer (Jones et
al. 1994) is infected. Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and
the largest limiting factor in recent decades appears to be the high mortality and colony extirpation
associated with introduced plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Plague
epidemics were first reported in the western United States in 1899 (Dicke 1926) and in northern Colorado
in 1948 (Ecke and Johnson 1952). Instead of living in extensive colonies as they once did, prairie dogs
exist in metapopulations of smaller colonies that periodically go extinct and are recolonized (Antolin et al.
2002, Stapp et al. 2004). Prairie dog colonies support a diverse community of associated species
(Lomolino and Smith 2004, Smith and Lomolino 2004, Hardwicke 2006, Stapp et al. 2008), many of
which are not susceptible to plague but may be indirectly effected.
In order to conserve prairie dogs and species associated with their colonies, principally the blackfooted ferret (Mustela nigripes), a plague vaccination program is being tested. Additional species that
may benefit from this program include those listed in the Conservation Plan for Grassland Species in
Colorado (Colorado Division of Wildlife 2003): burrowing owl (Athene cunicularia: BUOW), mountain
plover (Charadrius montanus: MOPL), ferruginous hawk (Buteo regalis: FEHA), and swift fox (Vulpes
velox) and in the Colorado Sagebrush Conservation Assessment and Strategy (Boyle and Reeder 2005):
Brewer’s sparrow (Spizella breweri: BRSP), green-tailed towhee (Pipilo chlorurus: GTTO), sage sparrow
(Artemisiospiza belli: SAGS), sage thrasher (Oreoscoptes montanus: SATH), and vesper sparrow

3

�(Pooecetes gramineus: VESP), as well as BUOW. BUOW and MOPL are known to decline or disappear
on colonies that are not reoccupied by prairie dogs after plague epizootics (Butts and Lewis 1982; Sidle et
al. 2001; Augustine et al. 2008; Tipton et al. 2008; Conrey 2010), and horned lark, McCown’s longspur,
golden eagle, and prairie falcon may benefit from active colonies.
From 2013‒2015, researchers in several western states are field-testing the uptake and efficacy
(SPV Subcommittee 2011) of a new sylvatic plague vaccine (SPV) for prairie dogs (Rocke et al. 2010). In
Colorado, CPW researchers led by Dan Tripp are surveying colonies before and after bait distribution and
conducting a mark-recapture study of prairie dogs and associated small mammal species (Tripp and
Rocke 2012). As an extension to this project, we are researching the effects of plague management on
avian species associated with prairie dog colonies, with particular focus on species of concern. We have
collected one year each of pre- and post-treatment data on birds, and additionally intend to demonstrate
whether avian species associations exist for colonies of Gunnison’s prairie dogs (Cynomys gunnisoni:
GUPD); most evidence for associated species comes from black-tailed prairie dogs (C. ludovicianus:
BTPD; Lomolino and Smith 2004, Smith and Lomolino 2004). A vaccine study was initially proposed for
white-tailed prairie dogs as well, but work in Colorado will remain limited to BTPD and GUPD. During
the initial years of the vaccination project, avian monitoring is also contributing information on responses
to climate, grazing, and insecticidal dusting. This project will aid in the development of a standardized
protocol for monitoring species associated with prairie dog colonies that could be used state-wide, as
called for in the Conservation Plan for Grassland Species in Colorado (Colorado Division of Wildlife
2003).
This project involves cooperators from Rocky Mountain Bird Observatory (RMBO), City of Fort
Collins, Bureau of Land Management (Gunnison office), National Park Service Florissant Fossil Beds
National Monument, and CPW wildlife managers and biologists from Areas 4, 14, and 16.
METHODS
Study Area
Study areas included BTPD colonies in north-central Colorado and GUPD colonies in central
Colorado. Baited sites received either vaccine or placebo baits in a blind procedure. Project areas that
were selected for the prairie dog vaccine study had adequate numbers of prairie dogs and good access.
BTPD (Larimer and Weld Co.) – Study colonies were located in Larimer and Weld Co. adjacent
to the Wyoming border at Soapstone Prairie Natural Area (SOAP), managed by City of Fort Collins
Natural Areas Program and Meadow Springs Ranch (MSR), managed by City of Fort Collins Utilities
Department. These sites are characterized by shortgrass and mixed-grass prairie dominated by grasses
(blue grama Bouteloua gracilis and buffalograss B. dactyloides) with smaller amounts of native (scarlet
globemallow Sphaeralcea coccinea) and non-native forbs, shrubs, and cactus. Sites were sometimes
grazed by cattle at low densities, and some non-baited sites were dusted with deltamethrin to control fleas
(and plague). There was much more cattle grazing in 2014 than in 2013, because it was a wetter year with
more forage. Both properties were closed to recreational shooting. Mark-resight estimates of BTPD
density on shortgrass prairie in Colorado average approximately 10 prairie dogs/acre (Magle et al. 2007).
Bird and vegetation surveys were conducted on five SOAP colonies and 20 MSR colonies. There
were nine vaccine project areas where raptors, predators, and passerine nests were surveyed: three prairie
dog complexes each received vaccine, placebo, and dusting treatments (3 treatments*3 complexes = 9
project areas). 1) The Jack Springs (Jac) colony spanning the SPNA/MSR border contained 100 vaccine
acres, 100 control acres, and ~280 dusted acres separated by 200 - 400 m buffer zones. 2) The Barton
complex in MSR contained ~130 vaccine acres and ~180 control acres, encompassing much of the Barton
south and west colonies (BarS and BarW). Raptor, predator, and passerine nest surveys were also done in
the 140 acre Barton east colony (BarE), although the prairie dog crew instead pairs a dusted portion of the

4

�Ferret Center colony (Fer) with the Barton complex. 3) The Ferret Center complex in MSR contained 40
vaccine acres, 40 control acres, and ~478 dusted acres, encompassing the entire North Benson south
colony (NBenS) and half of the Ferret Center (Fer) colony, with a 400 m buffer zone separating those
treatments.
GUPD (Gunnison Basin and Woodland Park) – Study colonies were located in the Gunnison
Basin (Gunnison, Saguache, and eastern Montrose Co.) and in the Woodland Park area (Teller Co.).
Gunnison Basin (GUNN) sites were managed by the Bureau of Land Management (BLM), Colorado
Parks and Wildlife (Miller Ranch State Wildlife Area and Van Tuyl/Cabin Creek SWA), and the U.S.
Forest Service Rio Grande National Forest. Woodland Park area (WOOD) sites were managed by the
National Park Service Florissant Fossil Beds National Monument (FFB) and Colorado Parks and Wildlife
(Dome Rock SWA). These sites are characterized by a mixture of big sagebrush (Artemisia tridentata),
rabbitbrush (Chrysothamnus viscidiflorus), prairie grasses and forbs (fringed sagebrush A. frigida) in a
matrix of pasture, pine and spruce-fir forests. Sites were sometimes grazed by cattle or sheep at low
densities, and all non-baited sites were dusted with deltamethrin to control fleas (and plague). All
properties except FFB were open to recreational shooting, but shooting was not prevalent and signage
discouraged shooting in vaccine project areas. The study area is within the known range of plague with
plague epizootics occurring near the study colonies in 2010 (Tripp et al. unpublished data). Visual counts
of Gunnison’s prairie dogs on colonies in Colorado averaged 6.1 prairie dogs/acre in 2010.
Bird and vegetation surveys were conducted on 13 GUNN colonies and four WOOD colonies.
There were nine vaccine project areas receiving vaccine, placebo, and dusting treatments where raptors,
predators, and passerine nests (GUNN only) were surveyed. Because of their small size, entire colonies
were treated. 1) The 33 acre Miller Ranch (MR) and 26 acre Kenny Moore (KM) colonies north of
Gunnison received vaccine and control treatments, and the 62 acre Power Line (PL) colony 16 km to the
south was designated as the paired dusted treatment. 2) The 46 acre Cabin Creek (CC), 37 acre BLM-15
(B15), and 27 acre BLM-5 (B5) colonies southeast of Gunnison received vaccine and control treatments,
and the 69 acre BLM-18 (B18) colony was designated as the paired dusted treatment. B5 has been baited
in the past due to concerns that GUPD sample size would be too low in B15. All these colonies are within
the same complex. 3) Two ~20 acre Florissant Fossil Beds (FFB) and one 24 acre Dome Rock (DR)
colony southwest of Woodland Park (150 km east of Gunnison Basin) received vaccine and control
treatments. There was no available colony to use as the paired dusted treatment. The original FFB colony
(FFBc) sampled in 2013 was discarded as a treatment area due to issues with adjacent private land, and
this colony was replaced with two nearby FFB colonies (FFBa and FFBb) in 2014.
At the GUPD study sites, we have an additional objective of determining whether avian species
associations exist; therefore, we selected off-colony sites for comparison of data from avian point counts,
vegetation surveys, and raptor counts. Time and financial constraints precluded nest searching or camera
use off colonies. We extended the 250 m point grid off colonies and created a doughnut-shaped region
that extended 500 – 1500 m from 2012 colony boundaries. Within these doughnut regions, each year we
randomly chose new grids of nine points (3 x 3) to serve as off-colony study areas on public lands. Some
grids had fewer than nine points due to land ownership boundaries. For each colony, we surveyed at least
two off-colony sites. Some off-colony sites were located in sagebrush, but others were located in forested
areas, especially in areas where forest was the dominant cover type (FFB, DR, and USFS property in the
Gunnison Basin).
Avian Point Counts
Each point was surveyed once in May – June 2014. At BTPD study sites, a 250 m grid of points
had already been established and surveyed by RMBO from 2006−2013. At GUPD study sites, we created
a 250 m grid of points. Within each off-colony grid, we randomly chose a minimum of four points to
survey. Two off-colony grids were randomly chosen to pair with each colony, so that we surveyed a

5

�minimum of eight off-colony points per paired colony. For larger colonies containing more than eight
survey points, we completed as many point counts off colony as we did on colony. Points were
considered to be “on colony” if located within 100 m of the boundary and with good views of the colony.
Most point counts were conducted between dawn and 10:00 and were never conducted in rain, hot
temperatures (above 30°C), or high winds that made it difficult to hear birds. Regardless of time or
weather, we did not conduct counts if we noticed that bird activity (especially singing and calling) was
dropping off.
We conducted 6-min. point counts, recording each bird’s species, horizontal (radial) distance, sex
(if known), use of the prairie dog colony (yes or no), minute of detection (1 – 6), and how it was detected
(visual, singing, calling, drumming, fly-over, or other). Membership in a cluster was noted, typically for
male-female pairs. After completing the bird count, we recorded weather and site characteristics at each
point, including time, temperature, wind speed, cloud cover, management type (typically cattle grazing,
sometimes dusting) and whether it was current, from this season or last season, and the presence of
excessive noise, roads (primary or secondary), and cliffs or rock outcroppings within 100 m. Within a 50
m radius, we recorded characteristics of tall nesting and perching substrate, including percent cover,
height, and dominant species for overstory plants ≥ 3 m and shrubs &gt; 30 cm but &lt; 3 m. Within a 5 m
radius, we recorded characteristics of ground cover, including percent cover of grasses (including sedges
and rushes), forbs, bare ground, cactus, rock, scat, shrubs, other cover such as lichen, and exotic species.
We also recorded the mean height of forbs, dominant exotic species, and the mean height and species of
the dominant two grasses.
We used the point count protocol designed for Integrated Monitoring of Bird Conservation
Regions (IMBCR: Hanni et al. 2012), except that we conducted bird surveys prior to vegetation surveys.
This helped to ensure that birds displaced by the observer, including those located at the point itself, were
recorded. We also altered IMBCR vegetation survey protocols slightly to make the protocol specific to
low stature prairie dog colonies, shortgrass prairie, and sagebrush systems. This was designed to be a
quick, visual assessment; a more involved protocol using a Daubenmire frame and robel pole was used on
transects and at nests.
Vegetation Transects
In addition to a visual assessment of vegetation at points, we sampled vegetation on transects and
at nests. We completed two transects on vaccine project colonies and paired off-colony sites and at least
one transect on non-project sites (both on and off colonies). To locate each transect, we randomly chose a
start and an end point from those used in avian point counts. From the start point, we walked along the
bearing toward the end point for 240 m, stopping every 20 m to collect vegetation data for a total of 13
points per transect, except on very small colonies. Transect data were collected during the growing
season.
At each stop point, we recorded the presence of active or inactive prairie dog burrows within 10
m, ground cover, dominant species, and visual obstruction. Percent ground cover was measured within a
50 cm square Daubenmire frame. We recorded the percent bare ground, rock, litter, scat, grass (including
sedges and rushes), forb, shrub, cactus, exotic, and other cover. We also recorded the dominant species
for each plant category present in the frame. Visual obstruction data were recorded by holding a robel
pole at the stop point on the transect and making observations from a distance of 4 m in each cardinal
direction with eye level at 1 m. The observer then noted which portions of the 122 cm (4 ft) pole were
obstructed by vegetation, identified the plant species obstructing the pole, and noted whether the pole was
substantially obstructed or was covered by just a wisp of vegetation (typically a blade of grass). We
estimated the height of any structures taller than the pole (a few trees at GUPD off-colony sites).
Raptor Counts

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�Raptors were sometimes sighted during avian point counts, but point counts are not an ideal
method for detecting raptors or other uncommon species. Therefore, we chose 1 – 3 locations per vaccine
project area (on- and off-colony), positioning observers so that the entire treatment area could be viewed
simultaneously. We conducted 30-min. raptor counts, recording each bird’s species, horizontal (radial)
distance, sex (if known), time of entry and exit, and behavior (high soar, low soar, directed flight, hover,
dive, call, perch, or nest). Membership in a cluster was noted, typically for male-female pairs. This
produces a time metric for assessing raptor use of treatment areas and colonies. At the start and end of the
count, we recorded weather characteristics, including time, temperature, wind speed, and cloud cover.
Raptor counts were conducted after 9:30 from January to March (wintering) and April to August
(breeding) and were never conducted in rain. As a supplement to the formal raptor counts, we recorded
incidental raptor observations.
Nest Searching and Monitoring
We searched for MOPL and BUOW nests throughout the study area through visual observation of
adult birds, typically in the morning and not in rainy conditions or high winds. MOPL nest in scrapes on
the ground in areas with a relatively high bare ground component. BUOW nest in prairie dog burrows,
often near colony edges and in burrows with low to moderately-sized mounds. Because these species
react more to humans on foot than to vehicles, we conducted surveys from a vehicle whenever possible.
When MOPL were detected, we observed the bird, sometimes backing away from the site, and waited for
the bird to sit down on a nest. When BUOW were detected, we searched for nests in the vicinity of their
perching location; typically males perched conspicuously near the nest burrow during the day.
We searched for passerine nests on colonies in vaccine project areas only, because the rope
dragging technique (Yackel Adams 2000) that works best for secretive birds and camouflaged nests is
time-consuming. Most prairie passerines nest in woven cups on the ground, while shrubland passerines
typically place their nests on branches or under shrubs. Each search area was surveyed at least twice. At
GUPD sites, each entire colony was searched via rope dragging. At BTPD sites, we searched 40 acre
plots, which was the size of the smallest treatment area and an area that could be searched by two people
in a half day. For those sites, we nest searched at two plots. We located one plot non-randomly, centered
on the area with greatest density of 2013 nest locations. The second plot was randomly located with one
corner on a point from the larger grid. Passerine nest searching was typically done after 9:30, because
grassland birds are more likely to be in attendance at their nests during the heat of the day, and not in
rainy conditions or high winds. At BTPD sites, we dragged a 100 ft (30 m), ½ inch gauge rope with two
people at each end, watching for flushing birds in the area ahead of and under the rope. Because the
GUPD sites contained a much higher shrub component, it was not possible to drag a heavy rope without
continuously getting snagged on vegetation; therefore, we used two different ¼ inch gauge ropes,
depending on the shrub component at the site. One was 10 m and the other was 23 m long, held above the
vegetation, with heavy hex nuts suspended from smaller ropes to disturb vegetation slightly and flush
birds.
Additional nests were found during point counts and nest monitoring. When we were unable to
find a nest during the initial search, we marked the GPS location and returned at a later date. We likely
found the majority of BUOW nests on the landscape using this method (Conrey 2010), but a smaller and
unknown proportion of MOPL and passerine nests were found.
MOPL and passerine nests were defined as structures containing at least one egg. Because
BUOW nests are underground, we defined their nests as burrows with shredded manure present at the
entrance (Garcia and Conway 2009), with feathers, regurgitated pellets, and prey remains providing
additional evidence of a nest attempt. At the time of nest discovery, we recorded the same weather
information that we recorded at points. We also did a rapid visual assessment of vegetation, with more
detailed data collected at nest completion when overheating of eggs and nest abandonment was no longer

7

�a concern. We described the nest structure and vegetation immediately around the nest and estimated
vegetation height, percent bare ground within a 1 m radius, and whether all, ≥ 50%, &lt; 50%, or none of the
nest could be seen from vantage points 5 m to the north and south. BUOW nests were marked with
brightly painted wooden stakes placed 10 m north of the nest burrow. MOPL and passerine nests were
marked with two small unpainted wooden stakes placed 5 m north and south of the burrow. We collected
any pellets that we observed near BUOW nests for possible future dietary analysis.
MOPL and BUOW nests, with relatively long incubation and nestling periods, respectively, were
monitored at least once per week. Passerine nests were monitored every 2 – 3 days. Starting with the first
visit when the nest was discovered, we recorded the time, any management activities (such as cattle
grazing), age of eggs and juveniles, and number of eggs, juveniles, and adults present. MOPL and
passerine eggs were aged by floating: eggs closer to hatch float higher in the water column. Juveniles
were aged according to keys for BUOW (Priest 1997) and LARB (Yackel Adams Unpub. data), and we
created our own photographic keys for all other species based on our 2013 observations.
Passerine nests were considered successful if at least one fully-feathered juvenile left the nest.
Evidence of success included juveniles outside the nest cup, mutes at the edge of the nest, and/or
displaying and calling adults, coupled with an intact nest and appropriate timing based on nest age.
MOPL nests were considered successful if at least one egg hatched, because their chicks are precocial and
can leave the nest area within hours of hatch. Evidence of MOPL success included pip chips, coupled
with an intact nest and appropriate timing based on nest age. BUOW nests were considered successful
when at least one fledgling aged ≥ 35 days was observed (Thomsen 1971, Davies and Restani 2006,
Conrey 2010), because they leave the nest burrow (but may return to it many times) at 10 – 14 days and
well before flight or independence are attained. Failed nests were destroyed, contained broken eggs,
and/or had eggs or nestlings that disappeared before their expected hatch (MOPL) or fledge (BUOW and
passerines) date. For analysis purposes, nests with unknown fate will have their histories truncated back
to the last date when the nest was active and will be coded as successful at that time.
At nest completion, we recorded the same vegetation data that were collected at points along
vegetation transects: presence of prairie dog burrows within 10 m, percent ground cover, and visual
obstruction. We placed the Daubenmire frame at 1 m in each cardinal direction and observed the robel
pole (placed at the nest) from 4 m in each cardinal direction, producing four readings of each metric. For
ground and shrub nests, we also recorded the height of the nest cup above (or below) ground and the plant
species or structure type (such as cow paddy) in which (or adjacent to which) the nest was located.
Camera Traps
Remote cameras (Reconyx Hyperfire Covert IR model PC800) were placed in each vaccine
project area to document use by mammalian predators and other wildlife. We increased the number of
remote cameras on BTPD colonies in 2014 to better sample their larger size relative to GUPD colonies.
We used one camera per small site and 2 – 3 cameras at larger sites. These cameras take photos when
triggered by motion from an object that is warmer than ambient temperature. Camera locations were
selected to maximize the potential for detections of mammalian predators without the use of baits or lures,
which might have acted as attractants and altered the sampling region beyond treatment areas and prairie
dog colonies. Cameras were positioned along game trails, aimed at coyote height, and tested before they
were armed. Cameras targeted water sources, fence lines, and other landscape features. We set the
cameras to take three photos when triggered, with no quiet period between photos.
Cameras were deployed in April – May 2014, and several more were added in mid-June. The
original nine cameras deployed in May – June of 2013 on BTPD sites were left in place and operated
year-round. We checked batteries and SD cards 2 – 6 times per year. Cameras were removed from GUPD
sites in September, prior to the advent of winter weather and GUPD hibernation. As a supplement to the

8

�camera data, we recorded incidental observations of predators such as coyotes, foxes, badgers, and
rattlesnakes.
Databases
We designed a database for this project using Microsoft SQL Server 2012 with the data entry
interface in Microsoft Access 2007. The database was designed by R. Conrey and D. Conrey, a
professional database developer who volunteered his time, to run on the Fort Collins CPW research
server. This allows multiple users to simultaneously access the database, while providing for daily backups and improved data security. Users can access a master list of codes for vegetation species, bird
species, management types, observers, sites, colonies, and points that if changed, will update throughout
the database. Users also access data entry forms for each data type described above, except for photo data.
The Reconyx photo database (Newkirk 2014) catalogs photos and stores the metadata associated
with them, displaying (but not storing) the photos themselves within Access forms. Users identify species
in photos using stand-alone modules which are then loaded into the database. Each photo is examined by
at least two observers, and a referee (R. Conrey or field crew leader) resolves any conflicts in IDs.
Identification is ongoing, with 2013 photo processing nearly complete.
Data Analysis
Thus far, all data have been entered and summarized, but data proofing is ongoing and statistical
analyses have not yet been completed. We have completed bird and vegetation species lists and
summarized ground cover and visual obstruction data collected at transects. For raptor counts, we have
calculated a proportional use index, dividing the usage minutes by the total survey minutes for each
species and site. Apparent nest success has been calculated as the proportion of nests fledging (BUOW
and passerines) or hatching (MOPL) at least one chick. Data will eventually be analyzed using Program
DISTANCE to estimate density from point counts, Program MARK to estimate nest survival and
occupancy from point counts and camera data, and R, or a similar statistical package, for other data types.
RESULTS
During the 2014 season, we collected the first year of post-treatment data, following initial bait
drop in late summer and fall of 2013. Since fall 2013, plague epizootics have occurred on one GUPD
colony and across half the BTPD study area at four treatment sites and five additional colonies. At two of
the three pairs of BTPD treatment sites, plague occurred at both the baited sites, meaning that both the
control and vaccine areas experienced outbreaks; however, these epizootics started in fall 2013 shortly
after vaccine drop and plague was likely present in the system prior to vaccination. All of these areas had
small numbers of prairie dogs during May – August 2014, with increasing abundance in the regions that
first experienced plague epizootics during 2013. In September 2014, black-footed ferrets were released in
two BTPD study colonies (the Roman and Brannigan colonies in the northwest part of Soapstone Prairie
Natural Area) that were 3.9 km from the nearest treatment site and 9.2 km from the nearest plague
epizootic. In October 2014, additional ferrets were released within the dusted part of a treatment colony
(the Ferret Center colony in the southeastern part of Meadow Springs Ranch), which is 0.5 km from the
nearest paired baited site and plague epizootic.
2014 was also a very wet year at the BTPD site. Normally dry playas and streambeds were full,
grasses were tall and formed seedheads in June, and a different suite of species was observed, including a
large flush of growth in species normally absent or a minor component of the prairie, such as six weeks
fescue and wooly plantain. In response, we saw a huge influx of lark buntings; we had two nests in 2013
and 69 nests in 2014, making lark buntings the most abundant breeders at our sites. McCown’s longspurs
declined, while the number of burrowing owl nests doubled.

9

�We conducted 718 avian point counts in 2014 and detected 95 bird species during the breeding
season (Table 1), for a total of 113 species detected over two years (one was detected only during raptor
counts: App. 1). The most common birds detected were lark bunting, horned lark, western meadowlark,
and McCown’s longspur at BTPD sites and Brewer’s sparrow, vesper sparrow, horned lark, sage thrasher,
raven, and western meadowlark at GUPD sites, in that order. We have detected 65 species on BTPD
colonies, 71 species on GUPD colonies, and 73 species off GUPD colonies. Of the species at GUPD sites,
55 were found both on and off colonies, while 16 were unique to colonies and 17 were unique to offcolony sites. Occupancy and density analyses will not be run until after the 2015 season.
We characterized vegetation at 718 point count locations, 225 nests, and ~1400 stop points along
111 transects (Table 1) in 2014. Over two years, we have documented 175 plant species (Table 1, App. 2)
or groups (moss, lichen, etc.), half of which were unique to either BTPD or GUPD sites. Most of the
plants at GUPD sites occurred at least once both on and off colonies, but 20% of the plant species
detected on GUPD colonies have thus far not been detected off colonies. Vegetation transect data (Table
2) suggested that BTPD colonies were dominated by grass (mainly blue grama) and bare ground, with
triple the grass coverage of GUPD sites and ~20% more grass than in 2013 when precipitation was closer
to the average (Conrey 2013). We had less litter and double the forb coverage at BTPD sites in 2014 as in
2013. GUPD sites had a more even distribution among cover types. Bare ground was the most common
cover type at the GUNN sites, both on and off colonies, and GUPD colonies had 14% more bare ground
than off-colony areas. At the GUPD sites, shrub cover (mainly rabbitbrush and big sagebrush) was much
higher in GUNN while litter and grass cover was much higher in WOOD. On- and off-colony GUPD
locations showed larger differences than they did in 2013, especially for bare ground. Exotic cover was 3
– 6% higher in 2014 than in 2013 at GUPD sites but decreased at BTPD sites. Dominant plant species of
each type are listed in Table 3, with a complete plant species list in App. 2.
Visual obstruction by vegetation was higher at GUPD sites (7 – 16% of the robel pole), which
were dominated by rabbitbrush, sagebrush, and taller grasses and forbs, than at BTPD sites (5% of the
pole), which were dominated by shortgrasses, but the difference in vegetation heights was much less than
in 2013. Approximately 6 cm were obstructed on BTPD colonies, with grasses responsible for most of the
obstruction. Differences between on- and off-colony locations at GUPD sites were larger in 2014 than in
2013, with taller vegetation (by 6 cm) off colonies. There tended to be gaps in the vegetation at GUPD
sites caused by different structural types: grasses, forbs and litter close to the ground, and branches of
shrubs higher up.
We conducted raptor counts at 35 locations for a total of 6420 minutes (Table 1) and detected 13
species (Table 4) in 2014. Burrowing owls, northern harriers, ferruginous hawks, prairie falcons, and
rough-legged hawks have been detected only on prairie dog colonies (the latter three, only on BTPD
colonies, where no off-colony counts were performed). During raptor counts, BUOW were detected only
on BTPD colonies, but one individual was again detected during nest searches on a GUPD colony (he did
not nest in either year). Swainson’s hawks and turkey vultures were more common on BTPD colonies that
at GUPD sites. In contrast, ravens, golden eagles, and red-tailed hawks were more common at GUPD
sites. It is unclear whether golden eagles and American kestrels have a higher level of use on- versus offGUPD colonies, as a strong relationship existed in one year but not the other: golden eagles showed the
strongest preference for prairie dog colonies during our surveys in 2013 (Table 4). During winter counts
on BTPD colonies, Swainson’s hawks and turkey vultures were replaced by rough-legged hawks, and
ferruginous hawks became more common than they were during summer.
We monitored 225 nests of 15 bird species in 2014, a large increase over the 68 nests of 11 bird
species found in 2013 (Conrey 2013; Tables 1, 5). The largest portion of the increase was explained by
lark bunting nests on BTPD colonies and Brewer’s sparrow nests at GUPD colonies. Following plague
epizootics, burrowing owl nest numbers increased in those colonies. Nest success was average for most

10

�species, with localized episodes of nest destruction on BTPD colonies due to hail and flooding: overall
apparent nest success was 47% in 2014 compared to 53% in 2013 (Table 5).
We deployed 18 cameras on BTPD colonies and 10 cameras on GUPD colonies (Table 1). BTPD
cameras are deployed year-round, because BTPDs do not hibernate, while GUPD cameras were deployed
from May into September. We now have 433,272 photos, and most of the 2013 photos have been
processed. As expected, many photos recorded prairie dogs, cows, pronghorn, and rabbits. We have
documented coyote (Canis latrans), badger (Taxidea taxus), swift fox (Vulpes velox), red fox (V. vulpes),
striped skunk (Mephitis mephitis), bobcat (Lynx rufus), and raccoon (Procyon lotor) use of vaccine
project areas (listed by number of occurrences in our photos). Overall 4-week detection rates per site
(naïve occupancy estimates) for the three most common carnivores from May 2013 – April 2014 ranged
from 7% for swift fox on BTPD colonies to 54% for coyotes on GUPD colonies (Table 6).
DISCUSSION
This was the second year of this study but only the first year of post-treatment data collection on
the project, as baits were first dropped in late summer and fall 2013. It will likely take additional years of
monitoring to detect potential changes in the avian community caused by plague management, as treated
colonies no longer experience extinction events. Since fall 2013, plague epizootics have occurred on one
GUPD colony and across half the BTPD study area, with prairie dogs beginning to increase again in all
colonies except for one BTPD colony where the epizootic began only recently. At two of the three pairs
of BTPD treatment sites, plague occurred at both the baited sites, meaning that both the control and
vaccine areas experienced outbreaks; however, these epizootics started in fall 2013 shortly after vaccine
drop and plague was likely present in the system prior to vaccination. Prairie dog researchers are
interested in whether prairie dogs persisted in treated areas during the outbreak, and whether prairie dog
numbers recover more quickly in treated areas. The presence of plague in our study system will contribute
to our ability to detect changes in avian communities caused by plague management. This is particularly
true for BTPD colonies; additional epizootics beyond the single outbreak at Dome Rock State Wildlife
Area will likely be required for us to detect differences on GUPD colonies.
In September and October 2014, black-footed ferrets were released in three BTPD study colonies,
one of which was only 0.5 km from the nearest baited site, which experienced a plague epizootic in fall
2013. The two release sites (not included in the prairie dog vaccine study) in Soapstone Prairie Natural
Area were both dusted and baited with vaccine. Released ferrets have been vaccinated against plague and
distemper, and are expected to move quickly into baited sites within the study area. They will likely
predate on adult birds and nests, but as 90% of their prey base is typically comprised of prairie dogs
(Clark 1986), the overall effect should be minimal. Two of the releases were in regions ~ 4 km from
current plague outbreaks, and eight of the 30 released individuals were detected during spotlighting
surveys 30 days after the release. It seems likely that at least some of these individuals will survive into
the 2015 season, but the fate of the ferrets released into a dusted region 0.5 km from a recent outbreak is
less certain. It is unknown whether ferrets will breed in 2015, and young ferrets must be captured to be
vaccinated, as they are not expected to consume vaccine baits designed for prairie dogs.
2014 was a much wetter year than 2013 at the BTPD site. Normally dry playas and streambeds
were full, grasses were tall and formed seedheads in June, and a different suite of species was observed,
including a large flush of growth in species normally absent or a minor component of the prairie. In
response, we saw a huge influx of lark buntings; they were the most common species detected in point
counts in 2014, and nest numbers increased from two nests in 2013 to 69 nests in 2014, making lark
buntings the most abundant breeders at our sites. In contrast, McCown’s longspur numbers declined,
while the number of burrowing owl nests doubled. These changes may also be related to concurrent
declines in prairie dogs associated with plague epizootics. Vegetation was no longer being clipped, and

11

�extinct areas had much more lush vegetation than usual. Burrowing owl nest numbers increased only in
areas that experienced plague epizootics and had persisting (or recovering) prairie dog populations.
Burrowing owls also increased in response to plague events (and prairie dog recolonization) in a previous
study in northern Colorado (Conrey 2010).
Thus far, data from vegetation surveys have identified differences between on- and off-colony
areas for GUPD sites, but bird data will require further analysis and a third year of data before we draw
conclusions regarding the uniqueness of the avian community on GUPD colonies. Over two seasons, 16
bird species have been detected only on GUPD colonies, not in off-colony areas, but we have not yet
modeled occupancy or density of these or other species. Raptor count data are ambiguous; the additional
sample size provided by a third study season and new randomly located off-colony sites will hopefully
provide enough power to make comparisons. BTPD increase bare ground and alter plant species
composition and nutrient cycling rates (Whicker and Detling 1988; Johnson-Nistler et al. 2004); effects of
GUPD on vegetation are not well-studied. GUPD do provide refugia and nests for BUOW, kit fox, and
small mammals (Miller et al. 1994, Meaney et al. 2006). However, their impact appears less dramatic
than that of BTPD (Grant-Hoffman and Detling 2006), perhaps because of differences in habitat, less
above-ground activity, little clipping of vegetation, and lower burrow densities (Seglund and Schnurr
2010).
We made several improvements to protocols in 2014. First, we began winter raptor counts on
BTPD colonies in order to sample wintering species such as rough-legged hawks; FEHA associations
with BTPD colonies have also mainly been documented in fall and winter (Smith and Lomolino 2004).
We also deployed our cameras on BTPD colonies year-round to sample mammalian carnivores during
winter; we did not do any sampling on GUPD colonies after September, as we had no personnel there and
GUPD hibernate. Second, we refined nest searching protocols, which improved our success in finding
nests. Third, by doing only one round of point counts and hiring two additional temporary staff in 2014,
we were able to begin nest searching and raptor counts earlier in the field season and increase sample
size. Fourth, we added cameras to more adequately sample large BTPD colonies and hopefully improve
occupancy estimation for mammalian carnivores. Another protocol improvement planned for next year
should help us to find more MOPL nests; we have gotten permission to use ATVs to search for MOPL
nests. We will use the same rope-dragging technique used successfully by Rocky Mountain Bird
Observatory to find MOPL nests. However, our sample sizes may still be limited by the apparent decline
in MOPL across the region that has been observed in the nearby Pawnee National Grasslands.
2015 will be the third and final study season for the plague vaccine project. After that, the
intensity of research and monitoring of bird communities on prairie dog colonies will depend on the
presence of plague in the system, presence of black-footed ferrets, available resources, and scale of
vaccine use. If the vaccine study suggests that this is a successful approach to plague management, then
the vaccine may be more broadly used as a management tool. This would allow us to change the spatial
scale of our research, perhaps including larger, more suitable areas for focal species such as BUOW and
MOPL. If more MOPL can be located within treated areas, we plan to collaborate with other MOPL
researchers across multiple sites to study changes in MOPL dynamics as a response to longer term plague
management. Our three years of research will also identify other appropriate focal species, determine
whether or not we should sample on GUPD colonies, and lead to a general monitoring protocol for
species associated with prairie dog colonies.
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12

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14

�TABLES

Point counts
Point count bird species
Vegetation transects
Vegetation species
Raptor count locations
Raptor count minutes
Nest searching area (acres)
Nests
Remote cameras
Remote camera photos

BTPD on
426
56
52
61
9
2760
680
167
18
325063

GUPD on
108
45
30
120
10
1800
300
58
10
44849

GUPD off
184
60
29
123
16
1860
N/A
N/A
N/A
N/A

TOTAL
718
95
111
175
35
6420
980
225
28
369912

Table 1. 2014 sample sizes for BTPD and GUPD sites, on and off prairie dog colonies. We did one point
count, three winter raptor counts, and 5 – 9 summer raptor counts per location. We surveyed 1 – 2
vegetation transects per site. Nest search plots were surveyed at least twice. Photos listed above were
taken between October 2013 and September 2014, and vegetation species include 2013 and 2014
detections. GUPD cameras were deployed during summer, and BTPD cameras were deployed year-round.

BTPD
% Cover
Grass
Bare
Litter
Forb
Rock
Scat
Cactus
Shrub
Other

on
55.9
19.4
8.7
8.3
3.2
1.5
1.4
0.6
1.1

GUNN
on
10.5
46.5
9.7
7.8
6.8
2.0
0.1
13.5
3.1

GUPD
GUNN WOOD WOOD
off
on
off
16.7
25.7
21.3
32.4
22.3
8.8
12.8
18.3
41.3
6.3
14.9
8.5
10.8
9.3
13.4
1.8
2.8
2.3
0.2
0.0
0.0
15.1
1.3
2.3
4.0
5.6
2.2

Table 2. Ground cover percentages from vegetation transects conducted on BTPD and GUPD sites, on
and off prairie dog colonies from June – August 2014.

15

�BTPD
Type
BTPD on
Grass blue grama
Forb
scarlet globemallow
Shrub winterfat
Cactus plains pricklypear
Other lichen
Exotic russian thistle

GUNN on
junegrass
fringed sagebrush
rabbitbrush
plains pricklypear
lichen
pinnate tansy mustard

GUPD
GUNN off
WOOD on
junegrass
blue grama
fringed sagebrush fringed sagebrush
big sagebrush
rabbitbrush
plains pricklypear N/A
lichen
lichen
timothy grass
kentucky bluegrass

WOOD off
Poa sp.
fringed sagebrush
common juniper
N/A
lichen
kentucky bluegrass

Table 3. Dominant plant species detected on vegetation transects at BTPD and GUPD sites, on and off prairie dog colonies in June – August 2014.
Close seconds included wooly plantain (forb at BTPD on) and ryegrass (exotic at GUNN on). Italics indicate dominant species that differs from
2013.

16

�Species
American crow
American kestrel
burrowing owl
common raven
Cooper’s hawk
ferruginous hawk
golden eagle
northern harrier
prairie falcon
red-tailed hawk
rough-legged hawk
sharp-shinned hawk
Swainson's hawk
turkey vulture
TOTAL minutes

2013 Use Rate (%)
BTPD GUPD GUPD
on
on
off
0
0
0.32
2.37
1.25
2.54
14.10
0
0
6.47 24.33 44.60
0
0
0
0.19
0
0
2.12
4.83
0.16
0.13
0
0
0
0
0
0.83
3.17
0
0
0
0
0
0
0
8.91
0
3.33
19.49
0.50
0.32
1560
1200
630

2014 Use Rate (%)
BTPD GUPD GUPD
on
on
off
0
0
0
4.94
4.67
2.19
6.94
0
0
3.50 31.89 16.27
0
0
0.11
0.77
0
0
0.46
2.39
4.60
0.46
1.22
0
0.07
0
0
1.79
5.83
9.21
0.84
0
0
0
0.72
0.91
1.82
0.67
1.02
9.74
2.67
5.57
2760
1800
1860

Table 4. Raptor use of vaccine project areas at BTPD and GUPD sites, on and off prairie dog colonies in
2013 and 2014. Use was quantified as time spent in project areas, and use rate = use minutes/total minutes
on BTPD, on GUPD, and off GUPD colonies. Data from 2014 include winter counts (Jan – March).

Species
Brewer's sparrow
burrowing owl
common raven
ferruginous hawk
green-tailed towhee
horned lark
lark bunting
McCown's longspur
mountain plover
sage thrasher
Swainson's hawk
vesper sparrow
western kingbird
western meadowlark
TOTAL

BTPD GUPD
15
33
13
0
1
0
1
0
0
3
36
1
69
0
26
0
2
0
0
13
1
0
0
8
1
0
2
0
167
58

# Nests
TOTAL Known Fate
48
44
13
11
1
1
1
1
3
3
37
35
69
67
26
26
2
2
13
13
1
1
8
8
1
1
2
2
225
215

Successful
26
8
1
0
3
14
22
10
1
9
0
7
0
1
102

%
Success
0.59
0.73
1.00
0
1.00
0.40
0.33
0.38
0.50
0.69
0
0.88
0
0.50
0.47

Table 5. Nest numbers and fate in vaccine project areas on BTPD and GUPD colonies in 2014.

17

�Species
coyote
badger
swift fox

BTPD GUPD
0.485 0.538
0.154 0.115
0.066
0

Table 6. Naïve (minimum) occupancy estimates (do not account for probability of detection) for
carnivores based on remote camera photos taken on BTPD and GUPD colonies in 2013. Occupancy was
calculated per site over 4-week intervals.

18

�APPENDIX 1: BIRD SPECIES LIST

Code
AMCO
AMCR
AMGO
AMGP
AMKE
AMRO
AWPE
BANS
BARS
BBMA
BCCH
BGGN
BHCO
BHGR
BLGR
BRBL
BRSP
BTAH
BUOR
BUOW
CAFI
CANG
CASP
CCLO
CHSP
CLNU
CLSW
COFL
COGR
COHA
CONI
CORA
DCCO
DEJU
DOWO
DUFL
EAME
EUST
EVGR

Common Name
American coot
American crow
American goldfinch
American golden-plover
American kestrel
American robin
American white pelican
bank swallow
barn swallow
black-billed magpie
black-capped chickadee
blue-gray gnatcatcher
brown-headed cowbird
black-headed grosbeak
blue grosbeak
Brewer's blackbird
Brewer's sparrow
broad-tailed hummingbird
Bullock's oriole
burrowing owl
Cassin's finch
Canada goose
Cassin's sparrow
chestnut-collared longspur
chipping sparrow
Clark's nutcracker
cliff swallow
Cordilleran flycatcher
common grackle
Cooper's hawk
common nighthawk
common raven
double-crested cormorant
dark-eyed junco
downy woodpecker
dusky flycatcher
eastern meadowlark
European starling
evening grosbeak

BTPD
on

x
x
x
x
x
x
x
x

GUPD
on
x
x
x

GUPD
off

x
x

x
x

x
x
x
x

x
x
x
x
x
x

x
x
x

x

x
x
x
x
x
x
x
x
x

x⁺
x

x
x
x
x
x

x
x
x
x
x
x

x
x
x
x

x

x*
x
x

x
x
x
x

x
x

x
x

19

x
x

x
x
x

x

�FEHA
GADW
GBHE
GOEA
GRSP
GTGR
GTTO
GUSG
HAWO
HETH
HOLA
HOSP
HOWR
KILL
LARB
LASP
LBCU
LEGO
LISP
LOSH
MALL
MCLO
MGWA
MOBL
MOCH
MODO
MOPL
NOFL
NOHA
NOMO
NRWS
OSFL
PISI
PRFA
PYNU
RBGU
RBNU
RCKI
RNDU
RNSA
ROPI
ROWR
RTHA

ferruginous hawk
gadwall
great blue heron
golden eagle
grasshopper sparrow
great-tailed grackle
green-tailed towhee
Gunnison sage-grouse
hairy woodpecker
hermit thrush
horned lark
house sparrow
house wren
killdeer
lark bunting
lark sparrow
long-billed curlew
lesser goldfinch
Lincoln's sparrow
loggerhead shrike
mallard
McCown's longspur
MacGillivray's warbler
mountain bluebird
mountain chickadee
mourning dove
mountain plover
northern flicker
northern harrier
northern mockingbird
northern rough-winged swallow
olive-sided flycatcher
pine siskin
prairie falcon
pygmy nuthatch
ring-billed gull
red-breasted nuthatch
ruby-crowned kinglet
ring-necked duck
red-naped sapsucker
rock pigeon
rock wren
red-tailed hawk

x

x
x
x

x
x
x

x
x

x
x
x
x
x
x
x
x
x
x

x
x
x
x
x

x
x
x
x

x
x
x

x
x
x
x
x
x*

x
x
x
x
x
x
x
x
x
x
x

20

x
x

x

x
x
x
x
x
x

x
x
x
x
x
x
x

x
x
x
x
x
x
x
x
x

�RWBL
SACR
SAGS
SAPH
SATH
SAVS
SOSP
SPTO
SSHA
STJA
SWHA
TOSO
TRSW
TUVU
VESP
VGSW
WAVI
WBNU
WCSP
WEBL
WEKI
WEME
WESJ
WETA
WEWP
WIPH
WISA
WISN
WITU
YEWA
YRWA
TOTAL

red-winged blackbird
sandhill crane
sage sparrow
Say's phoebe
sage thrasher
savannah sparrow
song sparrow
spotted towhee
sharp-shinned hawk
Steller's jay
Swainson's hawk
Townsend's solitaire
tree swallow
turkey vulture
vesper sparrow
violet-green swallow
warbling vireo
white-breasted nuthatch
white-crowned sparrow
western bluebird
western kingbird
western meadowlark
western scrub-jay
western tanager
western wood-pewee
Wilson’s phalarope
Williamson's sapsucker
Wilson's snipe
wild turkey
yellow warbler
yellow-rumped warbler

x
x
x
x
x

x

x

x

x

x
x

x

x
x

x
x
x
x

x
x

x
x
x

x
65

x
x*
x
x*

x*
x
x
x

x*
x
x
x
x

x
x
x
x
x
x
x

x
x
x
x
x

x
x
x
x

x
x
x
x
71

x
x
x
x
x
73

Table A1. Bird species list for BTPD and GUPD sites during summer 2013−2014. These species were
detected during avian point counts with several exceptions. ⁺ = detected while nest searching. * = detected
during raptor counts. Rough-legged hawks (RLHA not listed) were detected only during winter raptor
counts.

21

�APPENDIX 2: PLANT SPECIES LIST

Code
Family
Grasses, Sedges, and Rushes
ACHY
Poaceae
AGCR
Poaceae
ARPU
Poaceae
BODA
Poaceae
BOGR
Poaceae
BRIN
Poaceae
BRTE
Poaceae
CAIN
Cyperaceae
CALO
Poaceae
CARE
Cyperaceae
ELEL
Poaceae
ELGL
Poaceae
ELRE
Poaceae
ELTR
Poaceae
FEID
Poaceae
FEST
Poaceae
HECO
Poaceae
HOJU
Poaceae
JUBA
Juncaceae
KOMA
Poaceae
LOPE
Poaceae
MUHL
Poaceae
MUMO
Poaceae
NAVI
Poaceae
PASM
Poaceae
PHPR
Poaceae

Scientific Name

Common Name

Achnatherum hymenoides
Agropyron cristatum
Aristida purpurea
Bouteloua dactyloides
Bouteloua gracillis
Bromus inermis
Bromus tectorum
Carex inops ssp. heliophila
Calamovilfa longifolia
Carex Spp.
Elymus elymoides
Elymus glaucus
Elymus repens
Elymus trachycaulus
Festuca idahoensis
Festuca Spp.
Hesperostipa comata
Hordeum jubatum
Juncus balticus
Koeleria macrantha
Lolium perenne
Muhlenbergia Spp.
Muhlenbergia montana
Nassella viridula
Pascopyrum smithii
Phleum pratense

Indian Ricegrass
Crested Wheatgrass
Purple Threeawn
Buffalograss
Blue Grama
Smooth Brome
Cheatgrass
Sun Sedge
Prairie Sandreed
Sedge Spp. (Unidentified)
Squirreltail
Blue Wildrye
Quackgrass
Slender Wheatgrass
Idaho Fescue
Unknown Fescue
Needle &amp; Thread Grass
Foxtail Barley
Baltic Rush
Junegrass
Annual Ryegrass
Muhlenbergia Spp.
Mountain Muhly
Green Needlegrass
Western Wheatgrass
Timothy Grass

22

Exotic

x

x
x

BTPD
on

x
x
x
x

x
x

x
x

x
x
x

x
x
x
x
x
x
x
x

x

x
x
x

x
x
x

x

x
x

GUPD GUPD
on
off

x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x

x
x
x
x
x
x
x
x
x
x
x
x

�PIMI
POFE
POPR
RUSH
SCSC
SOBI
SPCR
VUOC
Forbs
ACMI
ANAR
ANMI
ANSE
ARAB
ARAN
ARFR
ARPO
ARUV
ASBI
ASDR
BASC
BEPL
CALI
CAMI
CHBE
CHEN
CHGL
CHLE
CHWA
CIAR
CICA

Poaceae
Poaceae
Poaceae
Juncaceae
Poaceae
Poaceae
Poaceae
Poaceae

Piptatherum micranthum
Poa fendleriana
Poa pratensis
Juncus Spp.
Schizachyrium scoparium
Sorghum bicolor
Sporobolus cryptandrus
Vulpia octoflora

Littleseed Ricegrass
Muttongrass
Kentucky Bluegrass
Rush Spp.
Little Bluestem
Sorghum
Sand Dropseed
Six Weeks Fescue

Asteraceae
Apiaceae
Asteraceae
Primulaceae
Asteraceae
Rosaceae
Asteraceae
Papavaraceae
Ericaceae
Fabaceae
Fabaceae
Chenopodiaceae
Scrophulariaceae
Scrophulariaceae
Scrophulariaceae
Chenopodiaceae
Chenopodiaceae
Euphorbiaceae
Chenopodiaceae
Chenopodiaceae
Asteraceae
Asteraceae

Achillea millefolium
Angelica arguta
Antennaria microphylla
Androsace septentrionalis
Artemisia absinthium
Argentina anserina
Artemisia frigida
Argemone polyanthemos
Arctostaphylos uva-ursi
Astragalus bisulcatus
Astragalus drummondii
Bassia scoparia
Besseya plantaginea
Castilleja linariifolia
Castilleja miniata
Chenopodium berlandieri
Chenopodium Spp.
Chamaesyce glyptosperma
Chenopodium leptophyllum
Chenopodium watsonii
Cirsium arvense
Cirsium canescens

Common Yarrow
White Angelica
Littleleaf Pussytoes
Pygmy-flower Rock-Jasmine
Absinth Wormwood
Silver Weed
Fringed Sagebrush
Crested/ Annual Pricklepoppy
Bearberry (Kinnikinnick)
Two-grooved Milkvetch
Drummond's Milkvetch
Kochia/ Mexican Fireweed
White River Coral Drops
Narrowleaf Paintbrush
Scarlet Paintbrush
Netseed Lambsquarter
Goosefoot Spp. (Unidentified)
Small Ribseed Sandmat
Narrowleaf Goosefoot
Watson's Goosefoot
Canada Thistle
Prairie/ Plains/ Creamy Thistle

23

x

x
x

x
x
x

x

x
x

x
x
x
x
x
x

x
x
x

x
x
x
x
x
x
x
x

x
x
x
x
x
x
x

x
x
x

x
x

x

x

x

x
x
x

x
x
x
x
x
x

x
x
x

x
x

x

�CIUN
CRTH
DESO
ERCA
ERCE
ERCO
ERFL
ERLO
EROV
ERRA
ERSP
ERST
ERUMA
ERUMM
FRVE
FRSP
GABO
GECA
GETR
GRSQ
GUSA
HAFL
HEPA
HEUC
HEVI
IRMI
LAOC
LEDE
LEVI
LEVU
LILE

Asteraceae
Boraginaceae
Brassicaceae
Asteraceae
Polygonaceae
Asteraceae
Asteraceae
Polygonaceae
Polygonaceae
Polygonaceae
Asteraceae
Asteraceae
Polygonaceae
Polygonaceae
Rosaceae
Gentianaceae
Rubiaceae
Geraniaceae
Rosaceae
Asteraceae
Asteraceae
Boraginaceae
Saxifragaceae
Saxifragaceae
Asteraceae
Iridaceae
Boraginaceae
Brassicaceae
Brassicaceae
Asteraceae
Linaceae

Cirsium undulatum
Cryptantha thyrsiflora
Descurainia sophia
Erigeron canus
Eriogonum cernuum
Erigeron compositus
Erigeron flagellaris
Eriogonum lonchophyllum
Eriogonum ovalifolium
Eriogonum racemosum
Erigeron speciosus
Erigeron strigosus
Eriogonum umbellatum v. aureum
Eriogonum umbellatum v. majus
Fragaria vesca
Frasera speciosa
Galium boreale
Geranium caespitosum
Geum triflorum
Grindelia squarrosa
Gutierrezia sarothrae
Hackelia floribunda
Heuchera parvifolia
Heuchera Spp.
Heterotheca villosa
Iris missouriensis
Lappula occidentalis
Lepidium densiflorum
Lepidium virginicum
Leucanthemum vulgare
Linum lewisii

Wavyleaf Thistle
Calcareous Cryptantha
Pinnate Tansy Mustard
Hoary Fleabane
Nodding Buckwheat
Cutleaf Daisy
Trailing Fleabane
Spearleaf Buckwheat
Cushion Buckwheat
Redroot Buckwheat
Showy Fleabane
Prairie Fleabane
Sulphur Buckwheat
Creamy Buckwheat
Woodland Strawberry
Monument Plant
Bedstraw
Pineywoods Geranium
Old Man's Whiskers
Curlycup Gumweed
Broom Snakeweed
Many-Flowered Stickseed
Littleleaf Alumroot
Alumroot Spp. (Unidentified)
Hairy False Golden Aster
Rocky Mountain Iris
Western Sticktight/ Stickweed
Common Pepperweed
Virginia Pepperweed
Ox Eye Daisy
Blue Flax

24

x
x
x
x
x
x

x

x

x
x
x
x
x
x
x

x
x

x
x
x
x
x
x
x
x

x
x
x
x

x
x
x

x
x
x

x
x
x
x

x
x
x
x

x
x
x

x
x
x
x

x

�LIPU
LUAR
LUWY
LYJU
MAPI
MARA
MARE
MATA
MEAR
MEHU
MELA
OECO
ORLU
OXLA
OXSE
PEBA
PECR
PHHO
PHLO
PIOP
PLMA
PLPA
POGR
POOL
POPE
PSLA
RHRO
SATR
SAXI
SEIN
SELA

Asteraceae
Fabaceae
Fabaceae
Asteraceae
Asteraceae
Liliaceae
Berberidaceae
Asteraceae
Lamiaceae
Boraginaceae
Boraginaceae
Onagraceae
Scrophulariaceae
Fabaceae
Fabaceae
Scrophulariaceae
Scrophulariaceae
Polemoniaceae
Polemoniaceae
Asteraceae
Plantaginaceae
Plantaginaceae
Rosaceae
Portulacaceae
Polygonaceae
Fabaceae
Crassulaceae
Chenopodiaceae
Saxifragaceae
Asteraceae
Crassulaceae

Liatris punctata
Lupinus argenteus
Lupinus wyethii
Lygodesmia juncea
Machaeranthera pinnatifida
Maianthemum racemosum
Mahonia repens
Machaeranthera tanacetifolia
Mentha arvensis
Mertensia humilis
Mertensia lanceolata
Oenothera coronopifolia
Orthocarpus luteus
Oxytropis lambertii
Oxytropis sericea
Penstemon barbatus
Penstemon crandallii
Phlox hoodii
Phlox longifolia
Picradeniopsis oppositifolia
Plantago major
Plantago patagonica
Potentilla gracilis
Portulaca oleracea
Polygonum persicaria
Psoralidium lanceolatum
Rhodiola rosea
Salsola tragus
Saxifraga Spp.
Senecio integerrimus
Sedum lanceolatum

Gayfeather/ Dotted Blazing Star
Silvery Lupine
Wyeth's Lupine
Skeletonweed/ Rush Skeleton Plant
Lacy Tansyaster
Feathery False Solomon's Seal
Oregon Grape
Tanseyleaf Tansyaster
Wild Mint
Mountain Bluebells
Prairie Bluebells
Crownleaf Evening Primrose
Yellow Owl's Clover
Lambert Crazyweed
White Locoweed
Beardlip Beardtongue
Crandall's Beardtongue
Spiny Phlox
Longleaf Phlox
Opposite Leaf Bahia
Common Plantain
Woolly Plantain
Slender Cinquefoil
Common Purslane/ Little Hogweed
Spotted Ladysthumb
Lemon Scurfpea
King's Crown
Russian Thistle / Tumbleweed
Saxifrage Spp. (Unidentified)
Lambstongue Ragwort
Spearleaf Stonecrop

25

x

x
x
x

x
x

x
x
x
x
x
x
x

x
x

x
x
x
x

x

x

x
x

x
x
x

x
x
x
x

x
x
x

x
x

x
x

x
x
x

x
x

x
x

x
x
x
x

x
x
x

�SENE
SOMI
SOTR
SPCO
SPFA
TAOF
TAVU
THAR
THRH
TRHY
TRPR
URDI
VIAM
VICI
WYAM
Shrubs
ACGL
AMAL
ARTR
ATCA
CEMO
CHVI
DAFR
EREF
ERNA
JUCO
JUSC
KRLA
PRAM
PRVI
PUTR

Asteraceae
Asteraceae
Solanaceae
Malvaceae
Euphorbiaceae
Asteraceae
Asteraceae
Brassicaceae
Fabaceae
Fabaceae
Fabaceae
Urticaceae
Fabaceae
Fabaceae
Asteraceae

Senecio Spp.
Solidago missouriensis
Solanum triflorum
Sphaeralcea coccinea
Taraxacum officinale
Tanacetum vulgare
Thlaspi arvense
Thermopsis rhombifolia
Trifolium hybridum
Trifolium pratense
Urtica gracilis
Vicia americana
Vicia Spp.
Wyethia amplexicaulis

Groundsel Spp. (Unidentified)
Missouri Goldenrod
Cutleaf Nightshade
Scarlet Globemallow
Spurge (Unidentified)
Dandelion
Common Tansy
Field Pennycress
Golden Pea
Alsike clover
Red Clover
Stinging Nettle
American Vetch
Vetch Spp. (Unidentified)
Mule-ears

Aceraceae
Rosaceae
Asteraceae
Chenopodiaceae
Rosaceae
Asteraceae
Rosaceae
Polygonaceae
Asteraceae
Cupressaceae
Cupressaceae
Chenopodiaceae
Rosaceae
Rosaceae
Rosaceae

Acer glabrum
Amelanchier alnifolia
Artemisia tridentata
Atriplex canescens
Cercocarpus montanus
Chrysothamnus viscidiflorus
Dasiphora fruticosa
Eriogonum effusum
Ericameria nauseosa
Juniperus communis ssp. alpina
Juniperus scopulorum
Krascheninnikovia lanata
Prunus americana
Prunus virginiana
Purshia tridentata

Mountain Maple
Serviceberry
Big Sagebrush
Fourwing Saltbush
Mountain Mahogany
Douglas Rabbitbrush
Shrubby Cinquefoil
Spreading Buckwheat
Rubber /Grey Rabbitbrush
Common Juniper
Rocky Mountain Juniper
Winter Fat
American Plum
Western Chokecherry
Bitter Brush

26

x
x
x
x
x

x

x
x

x

x

x

x
x
x

x
x

x
x

x
x
x

x
x

x
x

x
x
x

x
x

x

x
x
x
x
x
x
x
x
x
x
x

x
x
x
x
x
x
x
x
x
x
x
x
x

�RHTR
Anacardiaceae
RIAU
Grossulariaceae
RICE
Grossulariaceae
ROAR
Rosaceae
ROWO
Rosaceae
RUID
Rosaceae
SALI
Salicaceae
SYOC
Caprifoliaceae
TECA
Asteraceae
XANT
Asteraceae
YUGL
Agavaceae
Trees
ABLA
Pinaceae
PIEN
Pinaceae
PIFL
Pinaceae
PIPO
Pinaceae
PIPU
Pinaceae
POAN
Salicaceae
PODE
Salicaceae
POTR
Salicaceae
PSME
Pinaceae
Cacti and Other Plants
ESVI
Cactaceae
FUNG
LICH
MOSS
OPFR
Cactaceae
OPPO
Cactaceae
PESI
Cactaceae
Total

Rhus trilobata
Ribes aureum
Ribes cereum
Rosa arkansana
Rosa woodsii
Rubus idaeus
Salix Spp.
Symphoricarpos occidentalis
Tetradymia canescens
Xanthium spp.
Yucca glauca

Skunkbrush Sumac/ Squawbrush
Golden Currant
Wax Currant
Prairie/ Wild/ Porter Prairie Rose
Woods' Rose
Wild Red Raspberry
Willow Spp. (Unidentified)
Western Snowberry
Spineless Horsebrush
Cocklebur sp.
Great Plains Yucca/ Soapweed Yucca

Abies lasiocarpa
Picea engelmannii
Pinus flexilis
Pinus ponderosa
Picea pungens
Populus angustifolia
Populus deltoides ssp. wislizenii
Populus tremuloides
Pseudotsuga menziesii

Subalpine Fir
Engelmann Spruce
Limber Pine
Ponderosa Pine
Blue Spruce
Narrow-leaved Cottonwood
Rio Grande Cottonwood
Quaking Aspen
Douglas Fir

Escobaria vivipara

Pincushion Cactus
Fungi/ Mushroom/ Basidiomycota
Lichen
Moss
Brittle Pricklypear
Plains Pricklypear
Mountain Ball Cactus

Opuntia fragilis
Opuntia polyacantha
Pediocactus simpsonii
175 species

x

x
x

x
x

x
x
x

x
x
x

x
x

x
x
x
x
x
61

x
x
x
x
x
x

x
x

22

27

x
x
x

x
x
x

x
x
x
x
120

x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
123

�Table A2. Plant species list for BTPD and GUPD sites for 2013−2014.

28

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                  <text>Colorado Division of Parks and Wildlife
July 2014-June 2015

WILDLIFE RESEARCH REPORT
State of:
Cost Center:
Work Package:
Task No.:

Colorado
3420
1680
N/A

Federal Aid
Project No.

N/A

:
:
:
:

Division of Parks and Wildlife
Avian Research
Bird Conservation
Avian response to plague management on Colorado
prairie dog colonies

Period Covered: September 1, 2014 – August 31, 2015
Author: R. Yale Conrey
Principle Investigators: R. Yale Conrey, D. Tripp, J. Gammonley, CPW; A. Panjabi, E. Youngberg, Bird
Conservancy of the Rockies (formerly Rocky Mountain Bird Observatory).
Collaborators: Miranda Middleton (CPW), Bird Conservancy of the Rockies (formerly Rocky Mountain
Bird Observatory), City of Fort Collins Natural Areas and Utilities Programs, Bureau of Land
Management (Gunnison office), National Park Service Florissant Fossil Beds National Monument, and
CPW wildlife managers and biologists from Areas 4, 14, and 16.
All information in this report is preliminary and subject to further evaluation. Information MAY
NOT BE PUBLISHED OR QUOTED without permission of the author. Manipulation of these data
beyond that contained in this report is discouraged.
EXTENDED ABSTRACT
Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and the largest
limiting factor in recent decades appears to be the high mortality and colony extirpation associated with
plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Prairie dog colonies support a
diverse community of associated species, many of which are not susceptible to plague but may be
indirectly affected. In order to conserve prairie dogs and species associated with their colonies, principally
the black-footed ferret (Mustela nigripes), a plague vaccination program is being developed (Fig. 1a),
which may also benefit a suite of species (Fig. 1b) listed in the Conservation Plan for Grassland Species
in Colorado (Colorado Division of Wildlife 2003) and the Colorado Sagebrush Conservation Assessment
and Strategy (Boyle and Reeder 2005). CPW is involved in a multi-state, multi-agency study of prairie
dogs and associated small mammal species; the objective is to determine whether survival is enhanced by
the experimental vaccine compared to use of placebo or insecticide to control fleas, an important vector of
plague. They are also interested in how patterns of prairie dog abundance and occupancy change when
plague epizootics occur in plots receiving different treatments. As an extension to this project, we
initiated research in 2013 on the effects of plague management on avian species associated with prairie
dog colonies, with particular focus on species of concern. Our main long-term objective is to determine
whether areas treated to control plague differ from untreated areas in their avian communities. Shorterterm objectives are to 1) Determine how plague affects avian species and their predators associated with

1

�prairie dog colonies; 2) Determine whether avian species associations exist for colonies of Gunnison’s
prairie dogs (C. gunnisoni: GUPD); most evidence for associated species comes from black-tailed prairie
dogs (C. ludovicianus: BTPD); 3) Determine whether insecticidal dusting influences bird density or nest
survival; 4) Evaluate the importance of covariates such as weather and cattle grazing.
Study areas included BTPD colonies in north-central Colorado and GUPD colonies in westcentral Colorado. BTPD study colonies were dominated by short and mid-grasses and located in Larimer
and Weld Co. adjacent to the Wyoming border, managed by the City of Fort Collins. GUPD study
colonies were dominated by sagebrush mixed with other shrubs and grasses and located in the Gunnison
Basin (Gunnison, Saguache, and eastern Montrose Co.) and Woodland Park area (Teller Co.), managed
by the Bureau of Land Management, U.S. Forest Service, National Park Service, and CPW. The 2015
season was the third of three study seasons associated with phase 1 of this avian research project, which
coincided with Wildlife Health’s 3-year efficacy trials for the plague vaccine (Fig. 1a). In Colorado, CPW
Wildlife Health Program staff led by Dan Tripp surveyed colonies before and after bait distribution and
conducted a mark-recapture study of prairie dogs and associated small mammal species. Treated areas
were arranged in triplets with one vaccine, placebo, and dusted site per group; baited sites were assigned
vaccine or placebo baits in a blind procedure. We have collected 1 year of pre-treatment avian data and 2
years of post-treatment data. We created a 250 m point grid to sample all treated and untreated prairie dog
colonies on public land within the study region, and on GUPD colonies, we created a doughnut-shaped
region that extended 500 – 1500 m from colony boundaries and randomly chose grids of nine points (3 x
3) to serve as off-colony study areas. Although breeding season data collection for phase 1 is complete,
analyses are ongoing. Bird occupancy, density, and species composition will be estimated from point
count data. Summer and winter counts of diurnal raptors and early season passive and call-playback
surveys of mountain plover (Charadrius montanus) and burrowing owls (Athene cunicularia) were used
to sample species that are rarely detected during point counts. On-colony nest survival rates will be
estimated for passerines (Fig. 1d, e) and burrowing owls. Remote camera data will be used to estimate
summer and winter on-colony occupancy rates for mammalian carnivores, including coyotes, badgers,
and swift fox. Finally, we have quantified percent ground cover, visual obstruction (Fig. 1c), and species
composition of vegetation at points, nests, and along randomly located transects.
Since fall 2013, plague epizootics have occurred on one GUPD colony and across ~70% of the
BTPD study area. In September and October 2014 and 2015, black-footed ferrets were released in three
BTPD study colonies. Precipitation (Fig. 2) has varied greatly over the three years of this study,
particularly on BTPD sites, from slightly dry to very wet, compared to the 30-year average. At this point,
data analyses are all preliminary, with detailed analysis to follow during 2015 – 2016. From 2013 – 2015,
we detected 130 bird species during the breeding season. During BTPD colony surveys, at least three bird
species (Brewer’s blackbird Euphagus cyanocephalus, Brewer’s sparrow Spizella breweri, and vesper
sparrow Pooecetes gramineus) appeared to have higher detection rates on active prairie dog colonies,
while two species (grasshopper sparrow Ammodramus savannarum and lark bunting Calamospiza
melanocorys) appeared to have higher detection rates on colonies with extinct or severely reduced prairie
dog populations following plague outbreaks (Table 2). During surveys on and off GUPD colonies, seven
species (Brewer’s sparrow, common raven Corvus corax, horned lark Eremophila alpestris, red-winged
blackbird Agelaius phoeniceus, sage thrasher Oreoscoptes montanus, vesper sparrow, and western
meadowlark Sturnella neglecta) appeared to show associations with colonies, while four species (darkeyed junco Junco hyemalis, green-tailed towhee Pipilo chlorurus, mountain chickadee Poecile gambeli,
and western wood-pewee Contopus sordidulus) had higher detection rates off colonies, and many others
showed no pattern (Table 3). We documented 217 plant species over three years. Colonies contained a
higher bare ground component with lower vegetation heights than off-colony sites, with shortgrasses
dominant at BTPD sites and a more even distribution of grasses, forbs, and shrubs at GUPD sites.
Vegetation species composition was highly variable at BTPD sites over time, with increasing grasses and
forbs and decreasing bare ground during an El Niño event associated with high rainfall during the

2

�growing season (Table 5, Fig. 2). We detected 17 raptor species during on- and off-colony counts.
Burrowing owls, northern harriers Circus cyaneus, ferruginous hawks Buteo regalis (Fig. 1b), and roughlegged hawks Buteo lagopus were detected only on prairie dog colonies (ferruginous hawks, only on
BTPD colonies). Apparent nest success varied between 50 and 57%, except that it was 40% on BTPD
colonies and 69% at GUPD colonies in 2014. The decrease at BTPD colonies was likely attributable to
hail storms and flooding during the peak nesting season in 2014, but prior to doing a thorough nest
survival analysis, there was no obvious explanation for increased survival at GUPD colonies that year.
The increase in nest numbers after 2013 was partly due to increased effort and partly to a huge influx of
lark buntings during El Niño and following widespread plague events. In &gt; 1 million remote camera
photos, we have documented decreased coyote activity and increased swift fox activity over three years.
Swift fox occurred only on BTPD colonies and badgers were more commonly detected there, while
coyotes were equally common across all sites on BTPD and GUPD colonies.
This was the third year of data collection on this project, and it will likely take additional years of
monitoring to detect potential changes in the avian community caused by different types of plague
management, as treated colonies no longer experience extinction events. Regardless of the efficacy of
plague vaccine versus insecticide in reducing plague impacts, the vaccine will continue to be an important
tool due to cost/benefit of its use and increasing evidence that fleas are evolving resistance to
deltamethrin. Preliminary data suggest that bird densities do vary according to the status of prairie dogs
on a colony, with differences between active colonies and those with extirpated or severely reduced
prairie dog populations following plague outbreaks. These data also suggest several species may be
associated with GUPD, including Brewer’s sparrow, vesper sparrow, and sage thrasher. Vegetation
surveys have also identified differences between on- and off-colony areas. Raptor and camera data
collection will continue through winter 2015/2016. Afterward, the field-based portion of phase 1 of this
avian research project will be complete. We anticipate that phase 2 of this project will have a larger
spatial scale, with the plague vaccine used more broadly as a management tool, but will focus on fewer
data collection methods, species, and/or sites. Our study areas and the focus of data collection may shift,
depending on availability of vaccine baits, management priorities, and results of avian data analysis from
phase 1.

3

�COLORADO PARKS AND WILDLIFE RESEARCH REPORT
AVIAN RESPONSE TO PLAGUE MANAGEMENT ON COLORADO PRAIRIE DOG
COLONIES
REESA C. YALE CONREY
INTRODUCTION
Wildlife diseases are important to conservation and population dynamics of susceptible species
and may also have large indirect effects on non-susceptible species (Antolin et al. 2002). Introduced
pathogens have the potential for far-reaching effects on native ecosystems that go beyond the mortality of
infected individuals, particularly when a keystone species (Paine 1969) or ecosystem engineer (Jones et
al. 1994) is infected. Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and
the largest limiting factor in recent decades appears to be the high mortality and colony extirpation
associated with introduced plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Plague
epidemics were first reported in the western United States in 1899 (Dicke 1926) and in northern Colorado
in 1948 (Ecke and Johnson 1952). Instead of living in extensive colonies as they once did, prairie dogs
exist in metapopulations of smaller colonies that periodically go extinct and are recolonized (Antolin et al.
2002, Stapp et al. 2004). Prairie dog colonies support a diverse community of associated species
(Lomolino and Smith 2004, Smith and Lomolino 2004, Hardwicke 2006, Stapp et al. 2008), many of
which are not susceptible to plague but may be indirectly effected.
In order to conserve prairie dogs and species associated with their colonies, principally the blackfooted ferret (Mustela nigripes), a plague vaccination program is being tested (Fig. 1a). Additional
species that may benefit from this program include those listed in the Conservation Plan for Grassland
Species in Colorado (Colorado Division of Wildlife 2003): burrowing owl (Athene cunicularia: BUOW),
mountain plover (Charadrius montanus: MOPL), ferruginous hawk (Buteo regalis: FEHA, Fig. 1b), and
swift fox (Vulpes velox) and in the Colorado Sagebrush Conservation Assessment and Strategy (Boyle
and Reeder 2005): Brewer’s sparrow (Spizella breweri: BRSP), green-tailed towhee (Pipilo chlorurus:
GTTO), sage sparrow (Artemisiospiza belli: SAGS), sage thrasher (Oreoscoptes montanus: SATH), and
vesper sparrow (Pooecetes gramineus: VESP), as well as BUOW. BUOW and MOPL are known to
decline or disappear on colonies that are not reoccupied by prairie dogs after plague epizootics (Butts and
Lewis 1982; Sidle et al. 2001; Augustine et al. 2008; Tipton et al. 2008; Conrey 2010), and horned lark
(Eremophila alpestris), McCown’s longspur (Rhynchophanes mccownii), golden eagle (Aquila
chrysaetos), prairie falcon (Falco mexicanus), and other birds may benefit from active colonies.
From 2013‒2015, researchers in several western states are field-testing the uptake and efficacy
(SPV Subcommittee 2011) of a new sylvatic plague vaccine (SPV) for prairie dogs (Rocke et al. 2010);
the objective is to determine whether survival of prairie dogs and other small mammals is enhanced by
the experimental vaccine compared to use of placebo or insecticide to control fleas, an important vector of
plague. In Colorado, CPW researchers led by Dan Tripp are surveying colonies before and after bait
distribution and conducting a mark-recapture study of prairie dogs and associated small mammal species
(Tripp and Rocke 2012). As an extension to this project, we initiated research in 2013 on the effects of
plague management on avian species associated with prairie dog colonies, with particular focus on
species of concern. Our main long-term objective is to determine whether areas treated to control plague
differ from untreated areas in their avian communities. Shorter-term objectives are to 1) Determine how
plague affects avian species and their predators associated with prairie dog colonies; 2) Determine
whether avian species associations exist for colonies of Gunnison’s prairie dogs (C. gunnisoni: GUPD);
most evidence for associated species comes from black-tailed prairie dogs (C. ludovicianus: BTPD;
Lomolino and Smith 2004, Smith and Lomolino 2004); 3) Determine whether insecticidal dusting

4

�influences bird density or nest survival; 4) Evaluate the importance of covariates such as weather and
cattle grazing.
This was the third and final year of phase 1 data collection for this project. We have collected one
year of pre- and two years of post-treatment data on birds. During the initial years of the vaccination
project, avian monitoring will also contribute information on responses to plague, insecticidal dusting,
weather, and cattle grazing. This project will aid in the development of a standardized protocol for
monitoring species associated with prairie dog colonies that could be used state-wide, as called for in the
Conservation Plan for Grassland Species in Colorado (Colorado Division of Wildlife 2003).
METHODS
Study Area
Study areas included BTPD colonies in north-central Colorado and GUPD colonies in westcentral Colorado. Baited sites received either vaccine or placebo baits in a blind procedure. Project areas
that were selected for the prairie dog vaccine study had adequate numbers of prairie dogs and good
access.
BTPD (Larimer and Weld Co.) – Study colonies were located in Larimer and Weld Co. adjacent
to the Wyoming border at Soapstone Prairie Natural Area (SOAP), managed by City of Fort Collins
Natural Areas Program and Meadow Springs Ranch (MSR), managed by City of Fort Collins Utilities
Department. These sites are characterized by shortgrass and mixed-grass prairie dominated by grasses
(blue grama Bouteloua gracilis and buffalograss B. dactyloides) with smaller amounts of native (scarlet
globemallow Sphaeralcea coccinea) and non-native forbs, shrubs, and cactus. Sites were sometimes
grazed by cattle at low densities, and some non-baited sites were dusted with deltamethrin to control fleas
(and plague). There was much more cattle grazing in 2014 − 2015 than in 2013, because these were
wetter years (Fig. 2) with more forage. Both properties were closed to recreational shooting. Mark-resight
estimates of BTPD density on shortgrass prairie in Colorado average approximately 10 prairie dogs/acre
(Magle et al. 2007).
Bird and vegetation surveys were conducted on nine SOAP colonies and 23 MSR colonies. There
were nine vaccine project areas where raptors, predators, and passerine nests were surveyed: three prairie
dog complexes each received vaccine, placebo, and dusting treatments (3 treatments*3 complexes = 9
project areas). 1) The Jack Springs (Jac) colony spanning the SPNA/MSR border contained 100 vaccine
acres, 100 control acres, and ~280 dusted acres separated by 200 - 400 m buffer zones. 2) The Barton
complex in MSR contained ~130 vaccine acres and ~180 control acres, encompassing much of the Barton
south and west colonies (BarS and BarW). Raptor, predator, and passerine nest surveys were also done in
the 140 acre Barton east colony (BarE), although the prairie dog crew instead paired a dusted portion of
the Ferret Center colony (Fer) with the Barton complex. 3) The Ferret Center complex in MSR contained
40 vaccine acres, 40 control acres, and ~478 dusted acres, encompassing the entire North Bulger south
colony and half of the Ferret Center (Fer) colony, with a 400 m buffer zone separating those treatments.
GUPD (Gunnison Basin and Woodland Park) – Study colonies were located in the Gunnison
Basin (Gunnison, Saguache, and eastern Montrose Co.) and in the Woodland Park area (Teller Co.).
Gunnison Basin (GUNN) sites were managed by the Bureau of Land Management (BLM), Colorado
Parks and Wildlife (Miller Ranch State Wildlife Area and Van Tuyl/Cabin Creek SWA), and the U.S.
Forest Service Rio Grande National Forest. Woodland Park area (WOOD) sites were managed by the
National Park Service Florissant Fossil Beds National Monument (FFB) and Colorado Parks and Wildlife
(Dome Rock SWA). These sites are characterized by a mixture of big sagebrush (Artemisia tridentata),
rabbitbrush (Chrysothamnus viscidiflorus), prairie grasses and forbs (fringed sagebrush A. frigida) in a
matrix of pasture, pine and spruce-fir forests. Sites were sometimes grazed by cattle or sheep at low
densities, and all non-baited sites were dusted with deltamethrin to control fleas (and plague). All

5

�properties except FFB were open to recreational shooting, but shooting was not prevalent and signage
discouraged shooting in vaccine project areas. The study area is within the known range of plague with
plague epizootics occurring near the study colonies in 2010 (Tripp et al. unpublished data). Visual counts
of Gunnison’s prairie dogs on colonies in Colorado averaged 6.1 prairie dogs/acre in 2010.
Bird and vegetation surveys were conducted on 14 GUNN colonies and six WOOD colonies.
There were nine vaccine project areas receiving vaccine, placebo, and dusting treatments where raptors,
predators, and passerine nests (GUNN only) were surveyed. Because of their small size, entire colonies
were treated. 1) The 33 acre Miller Ranch (MR) and 26 acre Kenny Moore (KM) colonies north of
Gunnison received vaccine and control treatments, and the 62 acre Power Line (PL) colony 16 km to the
south was designated as the paired dusted treatment. 2) The 46 acre Cabin Creek (CC), 37 acre BLM-15
(B15), and 27 acre BLM-5 (B5) colonies southeast of Gunnison received vaccine and control treatments,
and the 69 acre BLM-18 (B18) colony was designated as the paired dusted treatment. B5 has been baited
in the past due to concerns that GUPD sample size would be too low in B15. All these colonies are within
the same complex. 3) Two ~20 acre Florissant Fossil Beds (FFB) and one 24 acre Dome Rock (DR)
colony southwest of Woodland Park (150 km east of Gunnison Basin) received vaccine and control
treatments. There was no available colony to use as the paired dusted treatment.
At the GUPD study sites, we have an additional objective of determining whether avian species
associations exist; therefore, we selected off-colony sites for comparison of data from avian point counts,
vegetation surveys, and raptor counts. Time and financial constraints precluded nest searching or camera
use off colonies. We extended the 250 m point grid off colonies and created a doughnut-shaped region
that extended 500 – 1500 m from colony boundaries. Within these doughnut regions, each year we
randomly chose new grids of nine points (3 x 3) to serve as off-colony study areas on public lands. Some
grids had fewer than nine points due to land ownership boundaries. For each colony, we surveyed at least
two off-colony sites. Some off-colony sites were located in sagebrush, but others were located in forested
areas, especially in areas where forest was the dominant cover type (FFB, DR, and USFS property in the
Gunnison Basin).
Avian Point Counts
Each point was surveyed once in May – June 2013 – 2015. At BTPD study sites, a 250 m grid of
points had already been established and surveyed by RMBO from 2006−2013. At GUPD study sites, we
created a 250 m grid of points. Within each off-colony grid, we randomly chose a minimum of four points
to survey. Two off-colony grids were randomly chosen to pair with each colony, so that we surveyed a
minimum of eight off-colony points per paired colony. For larger colonies containing more than eight
survey points, we completed as many point counts per off-colony colony as we did on colony. Points
were considered to be “on colony” if located within 100 m of the boundary and with good views of the
colony. Most point counts were conducted between dawn and 10:00 and were never conducted in rain, hot
temperatures (above 30°C), or high winds that made it difficult to hear birds. Regardless of time or
weather, we did not conduct counts if we noticed that bird activity (especially singing and calling) was
dropping off.
In addition to these breeding season counts, we conducted early counts for mountain plover and
burrowing owls, which arrive earlier than passerines and are poorly detected in regular point counts, in
late April – early May 2015. At all grid locations where these species were likely to be detected, we first
did 6-min. passive point count surveys. Passive surveys were followed by 9-min.call-playback surveys at
a selection of grid locations spaced at least 700 m to avoid calling in birds and double-counting them. The
call-playback sequence was 3 min. of silence, 3 min. of plover calls (30-sec. each of display, chirp, and
chick calls, each separated by 30-sec. of silence), and 3 min. of owl calls (two 30-sec. segments of coo
call and 30-sec. of alarm call, each separated by 30-sec. of silence). Surveys were conducted from ATVs,

6

�because plover and owls are much less likely to be disturbed by observers in vehicles than by observers
on foot.
We conducted 6-min.breeding season point counts, recording each bird’s species, horizontal
(radial) distance, sex (if known), use of the prairie dog colony (yes or no), minute of detection (1 – 6), and
how it was detected (visual, singing, calling, drumming, fly-over, or other). Membership in a cluster was
noted, typically for male-female pairs. After completing the bird count, we recorded weather and site
characteristics at each point, including time, temperature, wind speed, cloud cover, management type
(typically cattle grazing, sometimes dusting) and whether it was current, from this season or last season,
and the presence of excessive noise, roads (primary or secondary), and cliffs or rock outcroppings within
100 m. Within a 50 m radius, we recorded characteristics of tall nesting and perching substrate, including
percent cover, height, and dominant species for overstory plants ≥ 3 m and shrubs &gt; 30 cm but &lt; 3 m.
Within a 5 m radius, we recorded characteristics of ground cover, including percent cover of grasses
(including sedges and rushes), forbs, shrubs, cactus, litter, bare ground, rock, scat, other cover such as
lichen, and exotic species. We also recorded the dominant exotic species, and the mean height and species
of the dominant grass.
We used the point count protocol designed for Integrated Monitoring of Bird Conservation
Regions (IMBCR: Hanni et al. 2012), except that we conducted bird surveys prior to vegetation surveys.
This helped to ensure that birds displaced by the observer, including those located at the point itself, were
recorded. We also altered IMBCR vegetation survey protocols slightly to make the protocol specific to
low stature prairie dog colonies, shortgrass prairie, and sagebrush systems. This was designed to be a
quick, visual assessment; a more involved protocol using a Daubenmire frame and robel pole was used on
transects and at nests.
Vegetation Transects
In addition to a visual assessment of vegetation at points, we sampled vegetation on transects and
at nests. We completed two transects on vaccine project colonies and paired off-colony sites and at least
one transect on non-project sites (both on and off colonies). To locate each transect, we randomly chose a
start and an end point from those used in avian point counts. From the start point, we walked along the
bearing toward the end point for 240 m, stopping every 20 m to collect vegetation data for a total of 13
points per transect, except on very small colonies. Transect data were collected during the growing
season, most during July and August.
At each stop point, we recorded the presence of active or inactive prairie dog burrows within 10
m, ground cover, dominant species, and visual obstruction (Fig. 1c). Percent ground cover was measured
within a 50 cm square Daubenmire frame. We recorded the percent bare ground, rock, litter, scat, grass
(including sedges and rushes), forb, shrub, cactus, exotic, and other cover. We also recorded the dominant
species for each plant category present in the frame. Visual obstruction data were recorded by holding a
robel pole at the stop point on the transect and making observations from a distance of 4 m in each
cardinal direction with eye level at 1 m. The observer then noted which portions of the 122 cm (4 ft) pole
were obstructed by vegetation, identified the plant species obstructing the pole, and noted whether the
pole was substantially obstructed or was covered by just a wisp of vegetation (typically a blade of grass).
We estimated the height of any structures taller than the pole (a few trees at GUPD off-colony sites).
Raptor Counts
Raptors were sometimes sighted during avian point counts, but point counts are not an ideal
method for detecting raptors or other uncommon species. Therefore, we chose 1 – 3 locations per vaccine
project area (on- and off-colony), positioning observers so that the entire treatment area could be viewed
simultaneously. We conducted 30-min. raptor counts, recording each bird’s species, horizontal (radial)
distance, sex (if known), time of entry and exit, and behavior (high soar, low soar, directed flight, hover,

7

�dive, call, perch, or nest). Membership in a cluster was noted, typically for male-female pairs. This
produces a time metric for assessing raptor use of treatment areas and colonies. At the start and end of the
count, we recorded weather characteristics, including time, temperature, wind speed, and cloud cover.
Raptor counts were conducted after 9:30 from November to early March (wintering) and April to August
(breeding) and were never conducted in rain. As a supplement to the formal raptor counts, we recorded
incidental raptor observations.
Nest Searching and Monitoring
We searched for mountain plover and burrowing owl nests throughout the study area through
visual observation of adult birds, typically in the morning and not in rainy conditions or high winds.
Target search regions included areas where MOPL and BUOW were detected during call-playback
surveys, areas with nests in previous years, and other areas with appropriate habitat. MOPL nest in
scrapes on the ground in areas with a relatively high bare ground component. BUOW nest in prairie dog
burrows, often near colony edges and in burrows with low to moderately-sized mounds. Because these
species react more to humans on foot than to vehicles, we conducted surveys from a vehicle whenever
possible. Where ATV access was possible, we nest searched for MOPL using two ATVs with a 30 m rope
suspended between them. Bungies on each end of the rope allowed observers to keep the rope taut and
watch for running birds. When MOPL were detected, we observed the bird, sometimes backing away
from the site, and waited for the bird to sit down on a nest. When BUOW were detected, we searched for
nests in the vicinity of their perching location; typically males perched conspicuously near the nest
burrow during the day.
We searched for passerine nests (Fig. 1d) on colonies in vaccine project areas only, because the
rope dragging technique (Yackel Adams 2000) that works best for secretive birds and camouflaged nests
is time-consuming. Most prairie passerines nest in woven cups on the ground, while shrubland passerines
typically place their nests on branches or under shrubs. Each search area was surveyed at least twice. At
GUPD sites, each entire colony was searched via rope dragging. At BTPD sites, we searched 40 acre
plots, which was the size of the smallest treatment area and an area that could be searched by two people
in a half day. For those sites, we nest searched at two plots. We located one plot non-randomly, centered
on the area with greatest density of the previous year’s nest locations. The second plot was randomly
located with one corner on a point from the larger 250 m grid. Passerine nest searching was typically done
after 9:30, because grassland birds are more likely to be in attendance at their nests during the heat of the
day, and not in rainy conditions or high winds. At BTPD sites, we dragged a 100 ft (30 m), ½ inch gauge
rope with two people at each end, watching for flushing birds in the area ahead of and under the rope.
Because the GUPD sites contained a much higher shrub component, it was not possible to drag a heavy
rope without continuously getting snagged on vegetation; therefore, we used two different ¼ inch gauge
ropes, depending on the shrub component at the site. One was 10 m and the other was 23 m long, held
above the vegetation, with heavy hex nuts suspended from smaller ropes to disturb vegetation slightly and
flush birds. A few locations with very dense shrub cover were searched by disturbing vegetation with 4
foot wooden dowels in each outstretched hand.
Additional nests were found during point counts and nest monitoring. When we were unable to
find a nest during the initial search, we marked the GPS location and returned at a later date. We likely
found the majority of BUOW nests on the landscape using this method (Conrey 2010), but a smaller and
unknown proportion of MOPL and passerine nests were found.
MOPL and passerine nests were defined as structures containing at least one egg. Because
BUOW nests are underground, we defined their nests as burrows with shredded manure present at the
entrance (Garcia and Conway 2009), with feathers, regurgitated pellets, and prey remains providing
additional evidence of a nest attempt. Some BUOW burrows were probed with an electronic camera on
the end of a structure similar to a plumbing snake (Peeper System 2.3, Sandpiper Technologies). At the

8

�time of nest discovery, we recorded the same weather information that we recorded at points. We also did
a rapid visual assessment of vegetation, with more detailed data collected at nest completion when
overheating of eggs and nest abandonment was no longer a concern. We described the nest structure and
vegetation immediately around the nest and estimated vegetation height, percent bare ground within a 1 m
radius, and whether all, ≥ 50%, &lt; 50%, or none of the nest could be seen from vantage points 5 m to the
north and south. BUOW nests were marked with brightly painted wooden stakes placed 10 m north of the
nest burrow. MOPL and passerine nests were marked with two small unpainted wooden stakes placed 5 m
north and south of the burrow. We collected any pellets that we observed near BUOW nests for possible
future dietary analysis.
MOPL and BUOW nests, with relatively long incubation and nestling periods, respectively, were
monitored at least once per week. Passerine nests were monitored every 2 – 3 days. Starting with the first
visit when the nest was discovered, we recorded the time, any management activities (such as cattle
grazing), age of eggs and juveniles, and number of eggs, juveniles, and adults present. MOPL and
passerine eggs were aged by floating (Fig. 1e): eggs closer to hatch float higher in the water column.
Juveniles were aged according to keys for BUOW (Priest 1997) and LARB (Yackel Adams Unpub. data),
and we created our own photographic keys for all other species based on our 2013 observations.
Passerine nests were considered successful if at least one fully-feathered juvenile left the nest.
Evidence of success included juveniles outside the nest cup, mutes at the edge of the nest, and/or
displaying and calling adults, coupled with an intact nest and appropriate timing based on nest age.
MOPL nests were considered successful if at least one egg hatched, because their chicks are precocial and
can leave the nest area within hours of hatch. Evidence of MOPL success included pip chips, coupled
with an intact nest and appropriate timing based on nest age. BUOW nests were considered successful
when at least one fledgling aged ≥ 35 days was observed (Thomsen 1971, Davies and Restani 2006,
Conrey 2010), because they leave the nest burrow (but may return to it many times) at 10 – 14 days and
well before flight or independence are attained. Failed nests were destroyed, contained broken eggs,
and/or had eggs or nestlings that disappeared before their expected hatch (MOPL) or fledge (BUOW and
passerines) date. For analysis purposes, nests with unknown fate will have their histories truncated back
to the last date when the nest was active and will be coded as successful at that time.
At nest completion, we recorded the same vegetation data that were collected at points along
vegetation transects: presence of prairie dog burrows within 10 m, percent ground cover, and visual
obstruction. We placed the Daubenmire frame at 1 m in each cardinal direction and observed the robel
pole (placed at the nest) from 4 m in each cardinal direction, producing four readings of each metric. For
ground and shrub nests, we also recorded the height of the nest cup above (or below) ground and the plant
species or structure type (such as cow paddy) in which (or adjacent to which) the nest was located.
Remote Cameras
Remote cameras (Reconyx Hyperfire Covert IR model PC800) were placed in each vaccine
project area to document use by mammalian predators and other wildlife. In 2013, we had just one camera
per treatment, but we increased the number of remote cameras on BTPD colonies in 2014 – 2015 to better
sample their larger size relative to GUPD colonies. In 2015, we used two cameras at small BTPD sites
and 3 – 6 cameras at larger sites. These cameras take photos when triggered by motion from an object that
is warmer than ambient temperature. Camera locations were selected to maximize the potential for
detections of mammalian predators without the use of baits or lures, which might have acted as attractants
and altered the sampling region beyond treatment areas and prairie dog colonies. Cameras were
positioned along game trails, aimed at coyote height, and tested before they were armed. Cameras
targeted water sources, fence lines, and other landscape features and were positioned in space such that
the entire treatment was sampled as thoroughly as possible. We set the cameras to take three photos when
triggered, with no quiet period between photos.

9

�Most cameras were deployed in April – early May of each year. Most of the cameras at BTPD
sites were left in place and operated year-round. We checked batteries and SD cards at least 3 times
during summer and once during winter, but most camera checks were more frequent (once or twice per
month from May - September), particularly when cows were present on a site, as they sometimes
disrupted camera operation. Cameras were removed from GUPD sites in September, prior to the advent of
winter weather and GUPD hibernation. As a supplement to the camera data, we recorded incidental
observations of predators such as coyotes, foxes, and badgers.
Databases
We designed a database for this project using Microsoft SQL Server 2012 with the data entry
interface in Microsoft Access 2007. The database was designed by R. Conrey and D. Conrey, a
professional database developer who volunteered his time, to run on the Fort Collins CPW research
server. This allows multiple users to simultaneously access the database, while providing for daily backups and improved data security. Users can access a master list of codes for vegetation species, bird
species, management types, observers, sites, colonies, and points that if changed, will update throughout
the database. Users also access data entry forms for each data type described above, except for photo data.
The Reconyx photo database (Newkirk 2014) catalogs photos and stores the metadata associated
with them, displaying (but not storing) the photos themselves within Access forms. Users identify species
in photos using stand-alone modules which are then loaded into the database. Each photo is examined by
at least two observers, and a referee (R. Conrey or field crew leader) resolves any conflicts in IDs.
Identification is ongoing.
Data Analysis
Thus far, all data have been entered and summarized, but data proofing is ongoing and statistical
analyses have not yet been completed. For point counts, we calculated use rate for each species by
dividing the number of detections by the number of points per site*year. We completed bird and
vegetation species lists and summarized ground cover data collected at transects. For raptor counts, we
calculated a proportional use index, dividing the usage minutes by the total survey minutes for each
site*year. Apparent nest success was calculated as the proportion of nests fledging (raptors and
passerines) or hatching (MOPL) at least one chick. Naïve (minimum) occupancy estimates were
calculated for carnivores based on remote camera photos taken during 2-week intervals starting 1 April of
each year, separated into breeding and non-breeding periods. Data will eventually be analyzed using
Program DISTANCE to estimate density from point counts, Program MARK to estimate nest survival
and occupancy from point counts and camera data, and R for other data types.
RESULTS
We have collected one year of pre-treatment data and two years of post-treatment data since
initial bait drop in late summer and fall of 2013. Since fall 2013, plague epizootics have occurred on one
GUPD colony and across ~70% of the BTPD study area at 15 colonies. During each year of our study,
one of the three pairs of BTPD treatment sites experienced a plague outbreak, spanning the entire
treatment area by fall 2015, aside from a dusted region around the USFWS black-footed ferret breeding
center. Plague occurred at both the baited sites in each pair, meaning that both the control and vaccine
areas experienced outbreaks. This epizootic started in fall 2013 shortly after vaccine drop, so plague was
present in the system prior to vaccination. Colonies that experienced epizootics in 2013 experienced total
or near extirpation of prairie dogs, but beginning in 2014, treated areas experienced losses of ~50 – 95%
(two of these were treated with placebo baits). All of these areas had small numbers of prairie dogs with
increasing abundance within one year of the outbreak, but populations were severely reduced compared
pre-plague levels. In September 2014 and 2015, black-footed ferrets were released in two BTPD study

10

�colonies (the Roman and Brannigan colonies in the northwest part of Soapstone Prairie Natural Area). In
October 2014 and 2015, additional ferrets were released within the dusted part of a treatment colony (the
Ferret Center colony in the southeastern part of Meadow Springs Ranch), which is 0.5 km from the
nearest paired baited site and plague epizootic. In 2014, 42 total ferrets were released on BTPD study
colonies, with a similar number planned for release in 2015.
2014 and 2015 were very wet summers at the BTPD site compared to the 30-year average,
whereas precipitation at GUPD sites was dry to normal except for a wet May in 2015 (Fig. 2). Normally
dry playas and streambeds were full, grasses were tall and formed seedheads in June, and a different suite
of species was observed, including a large flush of growth in species normally absent or a minor
component of the prairie, such as six weeks fescue (Vulpia octoflora) and wooly plantain (Plantago
patagonica). We saw a huge influx of lark buntings (Calamospiza melanocorys), which typically nest in
or near taller vegetation than is typically found on these BTPD colonies; we had two nests in 2013, 69
nests in 2014, and 39 nests in 2015, making lark buntings the most abundant breeders at our sites, along
with McCown’s longspurs.
We conducted 2,284 avian point counts in 2013 − 2015 and detected 130 bird species during the
breeding season (Table 1, App. 1). The most common birds detected were horned lark, lark bunting,
western meadowlark, and McCown’s longspur at BTPD sites and Brewer’s sparrow, vesper sparrow,
green-tailed towhee, sage thrasher, horned lark, western meadowlark (Sturnella neglecta), and common
raven (Corvus corax) at GUPD sites, in that order. We detected 83 species on BTPD colonies, 81 species
on GUPD colonies, and 80 species off GUPD colonies. Occupancy and density analyses have not yet
been completed, but we have compared use rates (number of detections per point) across BTPD colonies
with differing prairie dog activity status and across GUPD sites, on and off colonies. During BTPD
colony surveys, at least three bird species (Brewer’s blackbird Euphagus cyanocephalus, Brewer’s
sparrow, and vesper sparrow) appeared to have higher detection rates on active prairie dog colonies, while
two species (grasshopper sparrow Ammodramus savannarum and lark bunting) appeared to have higher
detection rates on colonies with extinct or severely reduced prairie dog populations following plague
outbreaks (Table 2). During surveys on and off GUPD colonies, seven species (Brewer’s sparrow,
common raven, horned lark, red-winged blackbird Agelaius phoeniceus, sage thrasher, vesper sparrow,
and western meadowlark) appeared to show associations with colonies, while four species (dark-eyed
junco Junco hyemalis, green-tailed towhee Pipilo chlorurus, mountain chickadee Poecile gambeli, and
western wood-pewee Contopus sordidulus) had higher detection rates off colonies, and many others
showed no pattern (Table 3). In future density models, we will test the importance of these factors along
with other covariates such as weather, vegetation characteristics, cattle grazing, and predator occupancy
rates.
We characterized vegetation at 2,284 point count locations, 543 nests, and ~4000 stop
points along 321 transects in 2013 – 2015 and documented 217 species (Table 1, App. 2). Vegetation
transect data (Table 4) suggested that BTPD colonies were dominated by grass (mainly blue grama) and
bare ground, with triple the grass coverage of GUPD sites and ~20% more grass during the El Niño event
of 2014 – 2015 than in 2013 when precipitation was closer to the average (Table 5, Fig. 2). We observed
half the litter, a 10% drop in bare ground, and double the forb coverage at BTPD sites over the same time
period (Table 5). GUPD sites had a more even distribution among cover types (Table 4): bare ground was
the most common cover type at the GUNN sites, both on and off colonies, and GUPD colonies had 14%
more bare ground and shorter vegetation heights than off-colony areas. At the GUPD sites, shrub cover
(mainly big sagebrush) was much higher in GUNN while grass (mainly blue grama), litter, and forb
(mainly fringed sagebrush) cover were much higher in WOOD. Exotic cover was low: 1% at BTPD, 1 –
2% at WOOD, and 4 – 5% at GUNN sites (Table 4). The most common exotics were grasses (Table 6)
that were likely purposefully planted for forage in the past. Visual obstruction by vegetation (Fig. 1c) was
lowest on BTPD colonies (8.8 cm), moderate at WOOD sites (13.0 cm on colonies, 15.5 cm off colonies),

11

�and highest at GUNN sites (18.0 cm on colonies, 22.9 cm off colonies). Vegetation heights increased each
year of our study on BTPD colonies, with grasses responsible for most of the obstruction. Forbs had the
highest species richness, followed by grasses and shrubs. Dominant plant species of each type are listed in
Table 6, with a complete plant species list in App. 2.
We conducted raptor counts at 75 locations for a total of 20,250 minutes (Table 1) and detected
17 species in 2013 – 2015 (Table 7). Burrowing owls, northern harriers (Circus cyaneus), ferruginous
hawks (Fig. 1b), and rough-legged hawks (Buteo lagopus) were detected only on prairie dog colonies
(ferruginous hawks, only on BTPD colonies). Burrowing owls, Swainson’s hawks (Buteo swainsoni) and
turkey vultures (Cathartes aura) were more common on BTPD colonies, while ravens and red-tailed
hawks (Buteo jamaicensis) were more common at GUPD sites. During winter counts on BTPD colonies,
burrowing owls, Swainson’s hawks, and turkey vultures were replaced by rough-legged hawks, and
ferruginous hawks and northern harriers became more common than they were during summer.
Relationships between raptor use and plague, GUPD colony associations, and other factors have not yet
been explored.
We monitored 543 nests (Fig. 1d, e) of 21 bird species, with apparent nest success (fate) of 52%
in 2013 – 2015 (Tables 1, 8). Apparent nest success varied between 50 and 57%, except that it was 69%
at GUPD colonies and 40% on BTPD colonies in 2014, a wet year with frequent hail storms at BTPD
sites (Fig. 2). The increase in nest numbers after 2013 was partly due to increased effort and partly to a
huge influx of lark buntings during El Niño and following widespread plague events. Following plague
epizootics, burrowing owl nest numbers increased in those colonies. Comparing nesting data to point
count data, it appears that the species that preferred to sing and display on active BTPD colonies (versus
reduced or extinct colonies) do not often nest on those colonies (Tables 2, 8), although Brewer’s and
vesper sparrows did commonly sing and nest on GUPD colonies (Tables 3, 8). Daily nest survival will be
estimated using known fate models in Program MARK, and the importance of covariates such as plague,
weather, vegetation characteristics, cattle grazing, and predator occupancy rates will be explored.
Between 2013 and 2015, we increased remote camera numbers from 18 to 43, with 32 cameras on
BTPD colonies and 11 cameras on GUPD colonies in 2015 (Table 1). We have analyzed &gt; 1.13 million
photos (Table 1), and more photos will be taken this winter at BTPD colonies. BTPD cameras are
deployed year-round, because BTPDs do not hibernate, while GUPD cameras were deployed from May −
September. As expected, many photos recorded prairie dogs, cows, pronghorn (Antilocapra americana),
and rabbits. We have documented coyote (Canis latrans), swift fox (Vulpes velox), badger (Taxidea
taxus), striped skunk (Mephitis mephitis), red fox (V. vulpes), bobcat (Lynx rufus), black-footed ferret, and
raccoon (Procyon lotor) use of vaccine project areas (listed by number of occurrences in our photos). We
observed decreased coyote activity and increased swift fox activity from 2013 – 2015 (Table 9). Swift fox
and skunks occurred only on BTPD colonies and badgers were more commonly detected there, while
coyotes were equally common across all sites on BTPD and GUPD colonies. Overall 2-week detection
rates per site (naïve occupancy estimates) for the three most common carnivores ranged from 3% for
badgers on both BTPD colonies (April – July 2014) and GUPD colonies (August – Sept 2014) to 51% for
coyotes on BTPD colonies (August 2014 – March 2015; Table 9).
DISCUSSION
The 2015 season was the third of three study seasons associated with phase 1 of this avian
research project, which coincided with Wildlife Health’s 3-year efficacy trials for the plague vaccine. We
have collected one year of pre-treatment data and two years of post-treatment data. It will likely take
additional years of monitoring to detect potential changes in the avian community caused by plague
management, as treated colonies no longer experience extinction events. Therefore, data analyses will

12

�focus on shorter-term objectives, including evaluating the importance of plague on BTPD colonies and
colony associations for birds and GUPD.
Since fall 2013, plague epizootics have occurred on one GUPD colony and across ~70% of the
BTPD study area. All of these areas had small numbers of prairie dogs with increasing abundance within
one year of the outbreak, but populations were severely reduced compared to pre-plague levels. Plague
outbreaks have occurred across all treated BTPD sites, but plague was likely present in the system prior to
vaccination, and immunity takes time to develop after vaccination (D. Tripp, pers. comm.). Prairie dog
researchers are interested in whether prairie dogs persist in treated areas during outbreaks, recover more
quickly in treated areas, and have higher survival during enzootic periods (without obvious outbreaks). At
least three bird species (Brewer’s blackbird, Brewer’s sparrow, and vesper sparrow) appeared to have
higher detection rates on active prairie dog colonies, while two species (grasshopper sparrow and lark
bunting) appeared to have higher detection rates on colonies with extinct or severely reduced prairie dog
populations following plague outbreaks. Higher numbers of grasshopper sparrows and lark buntings
coincided with high May – June precipitation, which likely contributed to high flea numbers and
conditions favorable to a plague epizootic. Conditions across much of the BTPD study area in 2014 –
2015 began to support grassland birds that favor taller herbaceous vegetation over those that favor shorter
vegetation, such as horned larks and McCown’s longspurs. Interestingly, these two species did not show
an association with active BTPD colonies in our initial exploration of the data, while Brewer’s and vesper
sparrows, which nest in shrubs and dense herbaceous vegetation, respectively, did have higher detection
rates on active colonies. Further analyses of species density and nest survival that include other
covariates, such as weather and predator occupancy, will elucidate these relationships.
Thus far, data from avian point counts and vegetation surveys have identified differences between
on- and off-colony areas for GUPD sites, but more analyses are required before we draw conclusions
regarding the uniqueness of the avian community on GUPD colonies. Point count data suggest several
species may be associated with GUPD, including Brewer’s sparrow, vesper sparrow, and sage thrasher.
GUPD colonies contained a higher bare ground component with lower vegetation heights than off-colony
sites. BTPD increase bare ground and alter plant species composition and nutrient cycling rates (Whicker
and Detling 1988; Johnson-Nistler et al. 2004); effects of GUPD on vegetation are not well-studied.
GUPD do provide refugia and nests for BUOW, kit fox, and small mammals (Miller et al. 1994, Meaney
et al. 2006). However, their impact appears less dramatic than that of BTPD (Grant-Hoffman and Detling
2006), perhaps because of differences in habitat, less above-ground activity, little clipping of vegetation,
and lower burrow densities (Seglund and Schnurr 2010).
Precipitation has varied greatly over the three years of this study, particularly on BTPD sites,
from slightly dry to very wet, compared to the 30-year average. In summer 2014 and 2015, normally dry
playas and streambeds were full, grasses were tall and formed seedheads in June, and a different suite of
species was observed, including a large flush of growth in species normally absent or a minor component
of the prairie. In response, we saw a huge influx of lark buntings to BTPD sites; they were the most
common species detected in point counts and nest searches in 2014, and nest numbers continued to be
high in 2015. In contrast, McCown’s longspur numbers declined in 2014, then rebounded in 2015, while
the number of burrowing owl nests doubled each year. These changes may also be related to concurrent
declines in prairie dogs associated with plague epizootics, which accelerate during El Niño events when
cooler, wetter springs and summers result in high numbers of fleas, a major vector of plague. Vegetation
was no longer being clipped, and extinct areas had much more lush vegetation than usual. Burrowing owl
nest numbers increased only in areas that experienced plague epizootics and had persisting (or recovering)
prairie dog populations. Burrowing owls also increased in response to plague events (and prairie dog
recolonization) in a previous study in northern Colorado (Conrey 2010). High nest numbers did not
correspond with high nest success; apparent nest success declined from 54% in 2013 to 40% in 2015 at
BTPD sites, and then recovered to 57% in 2015. In contrast, precipitation at GUPD sites remained

13

�average to low throughout 2013 – 2015, except for high moisture in May 2015. Apparent nest success on
GUPD colonies increased from 50% in 2013 to 69% in 2014, then returned to 51% in 2015. The decrease
in nest success at BTPD colonies was likely attributable to hail storms and flooding during the peak
nesting season in 2014 (there was less hail and flooding in 2015), but prior to doing a thorough nest
survival analysis, there was no obvious explanation for increased survival at GUPD colonies that year.
Further analysis of these patterns will be elucidated by daily nest survival models that include factors such
as precipitation, prairie dog status, predator occupancy, and other factors.
In September and October 2014, 42 black-footed ferrets were released in three BTPD study
colonies, one of which was only 0.5 km from the nearest baited site, which experienced a plague epizootic
in fall 2013. Additional ferrets were released in 2015, and spotlight surveys in 2015 documented a
lactating female. The two release sites (not included in the prairie dog vaccine study) in Soapstone Prairie
Natural Area were both dusted and baited with vaccine, and the release site near the Ferret Center is a
dusted treatment within the vaccine study. Released ferrets have been vaccinated against plague and
distemper, and were expected to disperse into baited sites within the study area. We began documenting
ferrets in our remote camera photos in October 2015, but thus far, no ferrets have been seen or
photographed outside of the colonies where they were released. At this point, young ferrets must be
captured to be vaccinated, as they are not expected to consume vaccine baits designed for prairie dogs,
but work on an oral vaccine for ferrets is in progress. Ferrets will likely predate on adult birds and nests,
but as 90% of their prey base is typically comprised of prairie dogs (Clark 1986), the overall effect on
avian species should be minimal.
Raptor and camera data collection will continue through winter 2015/2016. Afterward, the fieldbased portion of phase 1 of this avian research project will be complete. Regardless of the efficacy of
plague vaccine versus insecticide in reducing plague impacts, the vaccine will continue to be an important
tool due to cost/benefit of its use and increasing evidence that fleas are evolving resistance to
deltamethrin. After 2015, scale of use of plague vaccine will depend on the cost and availability of
vaccine and analyses of prairie dog survival. The focus and intensity of research and monitoring of bird
communities on prairie dog colonies will depend on the presence of plague in the system, presence of
black-footed ferrets, available resources, and scale of vaccine use. If the vaccine study suggests that this is
a successful approach to plague management, then the vaccine may be more broadly used as a
management tool. This would allow us to change the spatial scale of our research during phase 2 of this
project, perhaps including larger, more suitable areas for focal species such as BUOW and MOPL. If
more MOPL can be located within treated areas, we plan to collaborate with other MOPL researchers
across multiple sites to study changes in MOPL dynamics as a response to longer term plague
management. Analyses this fall will also identify other appropriate focal species, determine whether or
not we should continue sampling on GUPD colonies, and provide guidance for a general monitoring
protocol for species associated with prairie dog colonies.
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16

�FIGURE LEGENDS
Figure 1. Photos from BTPD and GUPD sites during 2013 – 2015. a) GUPD consuming experimental
bait. b) Ferruginous hawk seen during a winter raptor count on a BTPD colony. c) Visual obstruction
measurement at a GUPD site. d) Horned lark nest on a BTPD colony. e) Estimating age of a lark bunting
nest by floating eggs on a BTPD colony.
Figure 2. Monthly precipitation at BTPD (Larimer and Weld Co.) and GUPD (Gunnison Co.) sites from
2013 – 2015, including the 30-year averages. Data were taken from the nearest weather station. BTPD
data are shown with solid lines and square symbols. GUPD data are shown with dashed lines and round
symbols.

17

�TABLES

Point counts
Bird species
Vegetation transects
Vegetation species
Raptor count locations
Raptor count minutes
Nests
Remote camera locations
Remote camera photos

BTPD on
1,274
83
148
91
9
7,890
413
32
985,819

GUPD on
446
81
84
152
13
5,010
115
11
145,992

GUPD off
TOTAL
564
2,284
80
130
89
321
155
217
53
75
7,350
20,250
15
543
N/A
43
N/A 1,131,811

Table 1. 2013 – 2015 sample sizes for BTPD and GUPD sites, on and off prairie dog colonies. Off-colony
locations were randomly (re-)chosen each year. We did one point count, 3 – 5 winter raptor counts, and 5
– 9 summer raptor counts per location. We surveyed 1 – 2 vegetation transects per site. Nest search plots
were surveyed at least twice. GUPD cameras were deployed during summer, and BTPD cameras were
deployed year-round. Camera numbers were highest in 2015, when new cameras were added while
previous years’ locations were retained.

18

�CODE

SPECIES

BRBL
BRSP
VESP
BARS
BHCO
CORA
EUST
HOLA
LASP
MCLO
RWBL
WEME
GRSP
LARB

Brewer's Blackbird
Brewer's Sparrow
Vesper Sparrow
Barn Swallow
Brown-headed Cowbird
Common Raven
European Starling
Horned Lark
Lark Sparrow
McCown's Longspur
Red-Winged Blackbird
Western Meadowlark
Grasshopper Sparrow
Lark Bunting

2013 Use Rate
A
R+E
0.067
0.053
0.116
0.063
0.371
0.116
0.156
0.200
0.049
0.053
0.192
0.084
0.000
0.021
6.656
7.505
0.045
0.084
2.509
1.947
0.138
0.253
1.531
2.337
0.018
0.000
3.817
3.316

2014 Use Rate
A
R+E
0.115
0.035
0.107
0.018
0.202
0.029
0.074
0.194
0.025
0.459
0.086
0.135
0.206
0.088
3.864
3.253
0.045
0.006
1.099
0.812
0.329
0.312
1.593
1.759
0.012
0.029
2.506
5.471

2015 Use Rate
A
R+E
0.815
0.045
0.095
0.111
0.481
0.177
0.143
0.075
0.069
0.018
0.079
0.111
0.011
0.192
3.709
3.562
0.116
0.168
0.762
1.453
0.640
0.279
2.587
2.270
0.323
0.486
1.201
2.195

TOTAL
COUNT
223
116
298
157
119
147
133
5583
108
1780
402
2496
235
3667

Table 2. Bird use rates for the most common species detected during avian point counts on BTPD prairie dog colonies with varying prairie dog
activity status: Active (A), Reduced (R) after a plague event, and Extinct (E). Use rate was calculated by dividing the number of detections by the
total number of points per colony per year. The first three species were more common on active colonies, those in the middle showed no
preference, and the last two species were more common on reduced or extinct colonies. Data reported here do not yet account for probability of
detection or the location of individual birds inside or outside of treatment area boundaries.

19

�CODE

SPECIES

BRSP
CORA
HOLA
RWBL
SATH
VESP
WEME
AMRO
BBMA
BTLH
NOFL
ROWR
DEJU
GTTO
MOCH
WEWP

Brewer's Sparrow
Common Raven
Horned Lark
Red-Winged Blackbird
Sage Thrasher
Vesper Sparrow
Western Meadowlark
American Robin
Black-billed Magpie
Broad-tailed Hummingbird
Northern Flicker
Rock Wren
Dark-eyed Junco
Green-tailed Towhee
Mountain Chickadee
Western Wood-pewee

2013 Use Rate
In
Out
2.240
0.663
0.700
0.143
0.880
0.367
0.170
0.071
1.350
0.133
3.030
0.888
0.910
0.694
0.370
0.357
0.260
0.102
0.210
0.143
0.240
0.286
0.240
0.214
0.110
0.184
0.640
0.969
0.040
0.133
0.200
0.347

2014 Use Rate
In
Out
1.095
0.827
0.514
0.189
0.333
0.438
0.133
0.124
0.486
0.249
0.838
0.492
0.371
0.319
0.210
0.195
0.086
0.054
0.124
0.108
0.114
0.059
0.019
0.130
0.019
0.086
0.333
0.341
0.057
0.178
0.057
0.173

2015 Use Rate
In
Out
1.512
1.242
0.518
0.527
0.619
0.329
0.369
0.177
0.494
0.404
1.048
0.430
0.488
0.332
0.196
0.383
0.107
0.123
0.179
0.343
0.095
0.137
0.125
0.137
0.071
0.162
0.345
0.549
0.012
0.126
0.196
0.141

TOTAL
COUNT
1155
406
435
172
440
864
431
269
107
193
129
130
104
467
93
164

Table 3. Bird use rates for the most common species detected during avian point counts on GUPD sites, comparing points located in prairie dog
colonies to those 500 – 1500 m outside colony boundaries. Use rate was calculated by dividing the number of detections by the total number of
points per colony per year. The first seven species were more common in colonies, those in the middle showed no preference, and the last four
species were more common outside colonies. Data reported here do not yet account for probability of detection or the location of individual birds
inside or outside of colony or off-colony grid boundaries.

20

�% Cover
Grass
Bare
Litter
Forb
Rock
Scat
Cactus
Shrub
Other
Exotic

BTPD
BTPD
on
51.9
17.5
14.8
7.7
3.5
1.7
1.2
0.9
0.9
0.9

GUNN
on
12.7
38.5
12.7
7.1
10.3
2.2
0.1
14.1
2.5
3.8

GUPD
GUNN WOOD WOOD
off
on
off
15.9
24.0
16.8
24.3
15.1
9.8
14.9
24.6
36.9
8.4
16.9
14.9
13.9
12.8
15.9
2.0
1.7
1.1
0.1
0.0
0.0
16.3
1.8
1.6
4.3
3.1
3.0
5.1
2.0
1.0

Table 4. Ground cover percentages from vegetation transects conducted on BTPD and GUPD sites, on
and off prairie dog colonies, averaged from June – August 2013 – 2015.

% Cover
Grass
Litter
Bare
Forb

2013
36.7
27.2
22.8
3.9

2014
55.9
8.7
19.4
8.3

2015
55.7
14.3
13.3
9

Table 5. Ground cover percentages for dominant vegetation types from 2013 – 2015 for BTPD sites in
north central Colorado.

21

�BTPD
Type
BTPD on
Grass blue grama
Forb
scarlet globemallow
Shrub winterfat
Cactus plains pricklypear
Other lichen
Exotic netseed lambsquarter

GUNN on
western wheatgrass
fringed sagebrush
big sagebrush
plains pricklypear
lichen
crested wheatgrass

GUPD
GUNN off
WOOD on
junegrass
blue grama
fringed sagebrush
fringed sagebrush
big sagebrush
rabbitbrush
plains pricklypear
N/A
lichen
lichen
kentucky bluegrass smooth brome

WOOD off
blue grama
fringed sagebrush
common juniper
N/A
lichen
smooth brome

Table 6. Dominant plant species detected on vegetation transects at BTPD and GUPD sites, on and off prairie dog colonies in June – August 2013
– 2015.

22

�Species
American Kestrel
Burrowing Owl
Common Raven
Ferruginous Hawk
Golden Eagle
Loggerhead Shrike
Northern Goshawk
Northern Harrier
Prairie Falcon
Rough-legged Hawk
Red-tailed Hawk
Sharp-shinned Hawk
Swainson’s Hawk
Turkey Vulture
TOTAL min

2013 Use Rate (%)
BTPD
GUPD
GUPD
in
in
out
1.89
0.76
2.32
13.84
0.00
0.00
6.35
11.43
74.20
0.13
0.00
0.00
2.08
5.81
0.14
0.00
0.00
0.00
0.00
0.00
0.00
0.13
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.63
2.67
0.00
0.00
0.00
0.00
8.55
0.00
2.75
19.12
0.29
0.29
1590
1050
690

2014 Use Rate (%)
BTPD
GUPD
GUPD
in
in
out
4.27
4.67
1.41
6.00
0.00
0.00
3.58
31.89
10.45
1.36
0.00
0.00
0.67
2.39
2.96
0.00
2.89
0.58
0.00
0.00
0.00
0.42
1.22
0.00
0.06
0.00
0.00
0.73
0.00
0.00
2.09
5.83
5.91
0.00
0.72
0.58
1.76
0.67
0.65
8.48
2.67
3.57
3300
1800
2910

2015 Use Rate (%)
BTPD
GUPD
GUPD TOTAL
in
in
out
min
1.13
2.55
1.60
469
31.03
1.39
0.00
1379
4.67
10.79
12.53
2572
4.60
0.00
0.00
185
0.97
0.83
0.59
315
0.00
0.00
0.00
69
0.00
0.00
0.80
30
0.63
0.00
0.00
57
0.97
0.00
0.03
32
0.13
0.28
0.00
34
1.07
8.19
1.28
641
0.00
0.00
0.00
30
3.70
0.23
0.08
363
3.10
2.13
1.09
921
3000
2160
3750
20250

Table 7. Raptor use of vaccine project areas at BTPD and GUPD sites, on and off prairie dog colonies in 2013 – 2015. Use was quantified as time
spent in project areas, and use rate = use minutes/total minutes in BTPD, in GUPD, and off GUPD colonies. Data include breeding counts (late
April – August) at all sites and wintering counts (November – early March) at BTPD sites. Species with small sample sizes are not shown:
American crow, Cooper’s hawk, and osprey (2 min each).

23

�Species
American Avocet
American Kestrel
Brewer's Blackbird
Brewer's Sparrow
Burrowing Owl
Common Raven
Ferruginous Hawk
Grasshopper Sparrow
Green-tailed Towhee
Horned Lark
Killdeer
Lark Bunting
Lark Sparrow
McCown's Longspur
Mountain Plover
Sage Thrasher
Swainson's Hawk
Unknown Bird
Vesper Sparrow
Western Kingbird
Western Meadowlark
TOTAL

2013 Fate (n)
BTPD
GUPD
(0)
(0)
(0)
(0)
(0)
(0)
1.00 (3)
1.00 (4)
0.71 (7)
(0)
(0)
(0)
0.00 (1)
(0)
(0)
(0)
(0)
(0)
0.55 (12)
0.00 (1)
1.00 (1)
(0)
1.00 (2)
(0)
(0)
(0)
0.31 (27)
(0)
1.00 (3)
(0)
(0)
0.00 (1)
1.00 (2)
(0)
0.00 (1)
(0)
(0)
0.00 (4)
(0)
(0)
(0)
(0)
0.54 (58)
0.50 (10)

2014 Fate (n)
BTPD
GUPD
(0)
(0)
(0)
(0)
(0)
(0)
0.57 (15) 0.60 (33)
0.73 (13)
(0)
1.00 (1)
(0)
0.00 (1)
(0)
(0)
(0)
(0) 1.00 (3)
0.38 (36) 1.00 (1)
(0)
(0)
0.33 (69)
(0)
(0)
(0)
0.38 (26)
(0)
0.50 (2)
(0)
(0) 0.69 (13)
0.00 (1)
(0)
0.00 (1)
(0)
(0) 0.88 (8)
0.00 (1)
(0)
0.50 (2)
(0)
0.40 (169) 0.69 (58)

2015 Fate (n)
BTPD
GUPD
0.50 (2)
(0)
0.67 (3)
(0)
(0) 0.00 (1)
0.25 (4) 0.47 (37)
0.88 (25) 0.00 (2)
1.00 (1)
(0)
1.00 (1)
(0)
0.50 (2)
(0)
(0) 0.00 (1)
0.44 (36)
(0)
(0)
(0)
0.55 (39)
(0)
0.50 (2) 1.00 (1)
0.55 (57)
(0)
0.50 (3)
(0)
(0) 0.67 (10)
1.00 (3)
(0)
0.00 (1)
(0)
(0) 0.71 (7)
0.00 (2)
(0)
0.00 (1)
(0)
0.57 (182) 0.51 (59)

Fate (n)
TOTAL
0.50 (2)
0.67 (3)
0.00 (1)
0.56 (96)
0.78 (47)
1.00 (2)
0.67 (3)
0.50 (2)
0.75 (4)
0.44 (86)
1.00 (1)
0.42 (110)
0.67 (3)
0.45 (110)
0.71 (8)
0.65 (24)
0.83 (6)
0.00 (3)
0.71 (19)
0.00 (3)
0.33 (3)
0.52 (536)

Table 8. Nest fate (n = sample size) in vaccine project areas on BTPD and GUPD colonies during 2013 – 2015. These are naïve apparent nest
survival estimates.

24

�Coyote
BTPD GUPD
2013: April - July
2013: August - March
2014: April - July
2014: August - March
2015: April - July
2015: August - Oct

0.42

0.44

0.46
0.36
0.51
0.38
0.21

0.48
0.27
0.47
0.26

0.38

Badger
Swift Fox
BTPD GUPD BTPD GUPD
0
0
0.13
0
0.10
0.11
0.07
0
0.03
0.05
0.14
0
0.18
0.03
0.47
0
0.14
0.08
0.30
0
0.09
0
0.46
0

Table 9. Naïve (minimum) occupancy estimates (do not account for probability of detection) for
carnivores based on remote camera photos taken on BTPD and GUPD colonies in 2013 – 2015. Each site
had one camera in 2013, and additional cameras were deployed in 2014 – 2015. Occupancy was
calculated per site over 2-week intervals. Occupancy rates are shown separately for the breeding season
versus the remainder of the year.

25

�FIGURES
a

b

c

Sean Streich

Sean Streich

d

e

Miranda Middleton

Miranda Middleton

Figure 1. Photos from BTPD and GUPD sites during 2013 – 2015. a) GUPD consuming experimental bait. b) Ferruginous hawk seen during a
winter raptor count on a BTPD colony. c) Visual obstruction measurement at a GUPD site. d) Horned lark nest on a BTPD colony. e) Estimating
age of a lark bunting nest by floating eggs on a BTPD colony.

26

�Precipitation
200
180
160
140

Precipitation (mm)

BTPD 2013
BTPD 2014

120

BTPD 2015
BTPD average

100

GUPD 2013
GUPD 2014

80

GUPD 2015
GUPD average

60
40
20
0
April

May

June

July

Figure 2. Monthly precipitation at BTPD (Larimer and Weld Co.) and GUPD (Gunnison Co.) sites from
2013 – 2015, including the 30-year averages. Data were taken from the nearest weather station. BTPD
data are shown with solid lines and square symbols. GUPD data are shown with dashed lines and round
symbols.

27

�APPENDIX 1: BIRD SPECIES LIST
CODE

AMAV
AMCO
AMCR
AMGO
AMGP
AMKE
AMRO
AMWI
AWPE
BAEA
BAIS
BANS
BARS
BBMA
BCCH
BGGN
BHCO
BHGR
BRBL
BRSP
BTLH
BUOW
BWTE
CAFI
CANG
CASP
CCLO
CCSP
CHSP
CLNU
CLSW
COFL
COGR
COHA
CONI
CORA
DCCO
DEJU

SPECIES

American Avocet
American Coot
American Crow
American Goldfinch
American Golden-plover
American Kestrel
American Robin
American Wigeon
American White Pelican
Bald Eagle
Baird's Sparrow
Bank Swallow
Barn Swallow
Black-billed Magpie
Black-capped Chickadee
Blue-gray Gnatcatcher
Brown-headed Cowbird
Black-headed Grosbeak
Brewer's Blackbird
Brewer's Sparrow
Broad-tailed Hummingbird
Burrowing Owl
Blue-winged Teal
Cassin's Finch
Canada Goose
Cassin's Sparrow
Chestnut-collared Longspur
Clay-colored Sparrow
Chipping Sparrow
Clark's Nutcracker
Cliff Swallow
Cordilleran Flycatcher
Common Grackle
Cooper's Hawk
Common Nighthawk
Common Raven
Double-crested Cormorant
Dark-eyed Junco

BTPD
Lar/Weld
In
x

x
x
x
x
x
x
x
x
x
x
x

Gunn
In

GUPD
Gunn
Wood
Out
In

x
x
x

x

x
x

x
x

x
x
x
x

x
x
x
x

x
x
x
x
x
x
x
x
x
x
x

x
x
x
x

x
x
x
x

x

x
x
x

x
x
x
x

x
x
x
x

Wood
Out

x

x*
x

x

x
x
x
x

x

x
x
x

x
x

x

x

x
x

x

x
x

x
x

x

x
x
x
x

28

x
x
x

x
x

x

x*
x
x

x

x

x

x

�DOWO
DUFL
EABL
EAKI
EAME
ECDO
EUST
EVGR
FEHA
GADW
GBHE
GOEA
GRAJ
GRSP
GTGR
GTTO
GUSG
GWTE
HAWO
HETH
HOLA
HOSP
HOWR
KILL
LARB
LASP
LBCU
LEGO
LISP
LOSH
MALL
MCLO
MGWA
MOBL
MOCH
MODO
MOPL
NOFL
NOGO
NOHA
NOMO
NRWS
NSHO

Downy Woodpecker
Dusky Flycatcher
Eastern Bluebird
Eastern Kingbird
Eastern Meadowlark
Eurasian Collared-Dove
European Starling
Evening Grosbeak
Ferruginous Hawk
Gadwall
Great Blue Heron
Golden Eagle
Gray Jay
Grasshopper Sparrow
Great-tailed Grackle
Green-tailed Towhee
Gunnison Sage-grouse
Green-winged Teal
Hairy Woodpecker
Hermit Thrush
Horned Lark
House Sparrow
House Wren
Killdeer
Lark Bunting
Lark Sparrow
Long-billed Curlew
Lesser Goldfinch
Lincoln's Sparrow
Loggerhead Shrike
Mallard
McCown's Longspur
MacGillivray's Warbler
Mountain Bluebird
Mountain Chickadee
Mourning Dove
Mountain Plover
Northern Flicker
Northern Goshawk
Northern Harrier
Northern Mockingbird
Northern Rough-winged Swallow
Northern Shoveler

x
x

x
x
x
x
x
x

x

x
x

x

x

x
x
x

x
x
x

x
x

x
x

x

x
x
x
x

x
x

x

x

x
x

x
x
x

x
x

x
x

x
x

x

x
x

x

x
x

x
x

x

x
x
x
x

x
x
x

x

x

x

x
x
x
x
x
x
x

x
x
x
x

x
x
x
x
x
x
x

x
x
x
x
x

x
x

x*
x
x
x

29

x
x
x
x

�OSFL
OSPR
PIGR
PISI
PRFA
PYNU
RBGU
RBNU
RCKI
RNDU
RNEP
RNSA
ROPI
ROWR
RTHA
RWBL
SACR
SAGS
SAPH
SATH
SAVS
SNBU
SOSP
SPTO
SSHA
STJA
SWHA
TOSO
TRES
TUVU
VESP
VGSW
WAVI
WBNU
WCSP
WEBL
WEKI
WEME
WESJ
WETA
WEWP
WHIM
WIPH

Olive-sided Flycatcher
Osprey
Pine Grosbeak
Pine Siskin
Prairie Falcon
Pygmy Nuthatch
Ring-billed Gull
Red-breasted Nuthatch
Ruby-crowned Kinglet
Ring-necked Duck
Ring-necked Pheasant
Red-naped Sapsucker
Rock Pigeon
Rock Wren
Red-tailed Hawk
Red-winged Blackbird
Sandhill Crane
Sage Sparrow
Say's Phoebe
Sage Thrasher
Savannah Sparrow
Snow Bunting
Song Sparrow
Spotted Towhee
Sharp-shinned Hawk
Stellar's Jay
Swainson's Hawk
Townsend's Solitaire
Tree Swallow
Turkey Vulture
Vesper Sparrow
Violet-green Swallow
Warbling Vireo
White-breasted Nuthatch
White-crowned Sparrow
Western Bluebird
Western Kingbird
Western Meadowlark
Western Scrub-Jay
Western Tanager
Western Wood-pewee
Whimbrel
Wilson's Phalarope

x
x*
x

x
x
x

x

x
x
x

x
x

x
x

x

x

x
x
x

x
x
x

x

x
x
x

x
x

x

x

x
x
x
x
x
x

x
x
x
x
x
x
x
x
x
x
x
x
x

x
x
x
x
x

x
x
x

x
x
x
x
x
x
x

x
x
x

x
x
x

30

x
x
x
x

x
x
x
x

x
x

x
x
x*
x
x
x
x
x
x
x
x
x
x

x
x
x
x

x*
x

x*
x
x

x*
x
x
x
x

x
x
x
x
x

x

x

x

x

x
x

x
x

�WISA
WISN
WITU
YEWA
YHBL
YRWA
TOTAL

Williamson's Sapsucker
Wilson's Snipe
Wild Turkey
Yellow Warbler
Yellow-headed Blackbird
Yellow-rumped Warbler

x

x
x
83

x

x

x
x
x

x

x

x
x
x
x

x
68

x
69

x
54

50

Table A1. Bird species list for BTPD and GUPD sites during summer 2013−2015. These species were
detected during avian point counts with several exceptions. * = detected during raptor counts. Roughlegged hawks (RLHA not listed) were detected only during winter raptor counts.

31

�APPENDIX 2: PLANT SPECIES LIST

Code

Family

Scientific Name

Common Name

Exotic

BTPD
BTPD
In

Gunn
In

GUPD
Gunn Wood
Out
In

x

x

x

x

x

x

x

Wood
Out

Grasses, Sedges, and Rushes
ACHY

Poaceae

Achnatherum hymenoides

Indian Ricegrass

ACLE

Poaceae

Achnatherum lettermanii

Letterman’s Needlegrass

AGCR

Poaceae

Agropyron cristatum

Crested Wheatgrass

x

x

AGST

Poaceae

Agrostis stolonifera

Creeping Bentgrass

x

x

ARPU

Poaceae

Aristida purpurea

Purple Threeawn

x

x

BODA

Poaceae

Bouteloua dactyloides

Buffalograss

x

x

x

x

BOGR

Poaceae

Bouteloua gracillis

Blue Grama

x

x

x

x

x

BRCI

Poaceae

Bromus ciliatus

Fringed Brome

x

x

x

BRHO

Poaceae

Bromus hordeaceus

Soft Brome

x

BRIN

Poaceae

Bromus inermis

Smooth Brome

x

BRPO

Poaceae

Bromus porteri

Porter Brome

BRTE

Poaceae

Bromus tectorum

Cheatgrass

CAIN

Cyperaceae

Carex inops ssp. heliophila

Sun Sedge

x

CALO

Poaceae

Calamovilfa longifolia

Prairie Sandreed

CARE

Cyperaceae

Carex Spp.

Sedge Spp. (Unidentified)

ELEL

Poaceae

Elymus elymoides

Squirreltail

ELGL

Poaceae

Elymus glaucus

Blue Wildrye

ELRE

Poaceae

Elymus repens

Quackgrass

ELTR

Poaceae

Elymus trachycaulus

Slender Wheatgrass

FEAR

Poaceae

Festuca arizonica

Arizona Fescue

FEID

Poaceae

Festuca idahoensis

Idaho Fescue

FEST

Poaceae

Festuca Spp.

Unknown Fescue

x

x

HECO

Poaceae

Hesperostipa comata

Needle &amp; Thread Grass

x

x

x

HOJU

Poaceae

Hordeum jubatum

Foxtail Barley

x

x

x

JUBA

Juncaceae

Juncus balticus

Baltic Rush

x

x

32

x

x

x
x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x
x

x
x

x

x

x

x

x

x

x

x

x
x
x

x

x

�KOMA

Poaceae

Koeleria macrantha

Junegrass

LOPE

Poaceae

Lolium perenne

Annual Ryegrass

MUHL

Poaceae

Muhlenbergia Spp.

Muhlenbergia Spp.

MUMO

Poaceae

Muhlenbergia montana

Mountain Muhly

MUTO

Poaceae

Muhlenbergia torreyi

Ring Muhly

NAVI

Poaceae

Nassella viridula

Green Needlegrass

PASM

Poaceae

Pascopyrum smithii

Western Wheatgrass

PHPR

Poaceae

Phleum pratense

Timothy Grass

PIMI

Poaceae

Piptatherum micranthum

POFE

Poaceae

Poa fendleriana

POPR

Poaceae

Poa pratensis

Kentucky Bluegrass

RUSH

Juncaceae

Juncus Spp.

Rush Spp.

SCPA

Poaceae

Schedonnardus paniculatus

Tumblegrass

SCPR

Poaceae

Schedonorus pratensis

Meadow Fescue

SCSC

Poaceae

Schizachyrium scoparium

Little Bluestem

SOBI

Poaceae

Sorghum bicolor

Sorghum

SPCR

Poaceae

Sporobolus cryptandrus

Sand Dropseed

x

VUOC

Poaceae

Vulpia octoflora

Six Weeks Fescue

x

ACMI

Asteraceae

Achillea millefolium

Common Yarrow

ACRE

Asteraceae

Acroptilon repens

Russian Knapweed

x

AMBL

Amaranthaceae

Amaranthus blitoides

Prostrate Pigweed

x

ANAR

Apiaceae

Angelica arguta

White Angelica

x

ANMI

Asteraceae

Antennaria microphylla

Littleleaf Pussytoes

ANMU

Ranunculaceae

Anemone multifida

Cutleaf Anemone

ANSE

Primulaceae

Androsace septentrionalis

Pygmy-flower Rock-Jasmine

ARAB

Asteraceae

Artemisia absinthium

Absinth Wormwood

ARAN

Rosaceae

Argentina anserina

Silver Weed

ARCA

Asteraceae

Artemisia campestris

Field Sagewort

ARCO

Caryophyllaceae

Arenaria congesta

Ballhead Sandwort

ARFE

Caryophyllaceae

Arenaria fendleri

Fendler's Sandwort

x

x

x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x

x

x

x

Littleseed Ricegrass

x

x

x

x

Muttongrass

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x

x
x

x

x

x

x
x

Forbs

33

x

x

x

x

x
x
x
x

x

x

x

x

x

x

x

x

x

x

x

x
x
x

x
x

x

x

�ARFR

Asteraceae

Artemisia frigida

Fringed Sagebrush

ARLU

Asteraceae

Artesmia ludoviciana

Prairie Sage

x

x

x

ARPO

Papavaraceae

Argemone polyanthemos

Crested/ Annual Pricklepoppy

ARUV

Ericaceae

Arctostaphylos uva-ursi

Bearberry (Kinnikinnick)

ASBI

Fabaceae

Astragalus bisulcatus

Two-grooved Milkvetch

x

x

x

ASDR

Fabaceae

Astragalus drummondii

Drummond's Milkvetch

x

x

x

ASMI

Fabaceae

Astragalus miser

Timber Milkvetch

x

ASPA

Fabaceae

Astragalus parryii

Parry's Milkvetch

x

ASSH

Fabaceae

Astralagus shortianus

Short's Milkvetch

BASC

Chenopodiaceae

Bassia scoparia

Kochia/ Mexican Fireweed

BEPL

Scrophulariaceae

Besseya plantaginea

White River Coral Drops

CALI

Scrophulariaceae

Castilleja linariifolia

Narrowleaf Paintbrush

x

CAMI

Scrophulariaceae

Castilleja miniata

Scarlet Paintbrush

CHBE

Chenopodiaceae

Chenopodium berlandieri

Netseed Lambsquarter

CHEN

Chenopodiaceae

Chenopodium Spp.

CHGL

Euphorbiaceae

CHLE
CHSE

x
x

x
x

x
x

x

x
x

x

x

x

x

x

Goosefoot Spp. (Unidentified)

x

x

Chamaesyce glyptosperma

Small Ribseed Sandmat

x

x

Chenopodiaceae

Chenopodium leptophyllum

Narrowleaf Goosefoot

Euphorbiaceae

Chamaesyce serpyllifolia

Thyme-leaf spurge

x

CHWA

Chenopodiaceae

Chenopodium watsonii

Watson's Goosefoot

x

CIAR

Asteraceae

Cirsium arvense

Canada Thistle

CICA

Asteraceae

Cirsium canescens

Prairie/ Plains/ Creamy Thistle

CIUN

Asteraceae

Cirsium undulatum

Wavyleaf Thistle

COAR

Convolvulaceae

Convolvulus arvensis

Field Bindweed

CRTH

Boraginaceae

Cryptantha thyrsiflora

Calcareous Cryptantha

DESO

Brassicaceae

Descurainia sophia

Pinnate Tansy Mustard

EQAR

Equisetaceae

Equisetum arvense

Field Horsetail

ERAS

Brassicaceae

Erysimum asperum

Western Wallflower

ERCA

Asteraceae

Erigeron canus

Hoary Fleabane

x

ERCE

Polygonaceae

Eriogonum cernuum

Nodding Buckwheat

x

ERCO

Asteraceae

Erigeron compositus

Cutleaf Daisy

ERFL

Asteraceae

Erigeron flagellaris

Trailing Fleabane

34

x

x

x

x

x

x

x

x

x

x

x
x

x
x
x

x

x

x

x

x

x
x

x

x
x
x
x

�ERLO

Polygonaceae

Eriogonum lonchophyllum

Spearleaf Buckwheat

x

EROV

Polygonaceae

Eriogonum ovalifolium

Cushion Buckwheat

x

ERRA

Polygonaceae

Eriogonum racemosum

Redroot Buckwheat

x

x

ERSP

Asteraceae

Erigeron speciosus

Showy Fleabane

x

x

ERST

Asteraceae

Erigeron strigosus

Prairie Fleabane

x

x

ERUMA

Polygonaceae

Eriogonum umbellatum v. aureum

Sulphur Buckwheat

x

x

x

ERUMM

Polygonaceae

Eriogonum umbellatum v. majus

Creamy Buckwheat

x

x

x

FRVE

Rosaceae

Fragaria vesca

Woodland Strawberry

x

x

FRSP

Gentianaceae

Frasera speciosa

Monument Plant

x

GABO

Rubiaceae

Galium boreale

Bedstraw

x

GECA

Geraniaceae

Geranium caespitosum

Pineywoods Geranium

GETR

Rosaceae

Geum triflorum

Old Man's Whiskers

GEVI

Geraniaceae

Geranium viscosissimum

Sticky Purple Geranium

GRSQ

Asteraceae

Grindelia squarrosa

Curlycup Gumweed

x

x

GUSA

Asteraceae

Gutierrezia sarothrae

Broom Snakeweed

x

x

x

HAFL

Boraginaceae

Hackelia floribunda

Many-Flowered Stickseed

x

x

HEPA

Saxifragaceae

Heuchera parvifolia

Littleleaf Alumroot

x

x

HEUC

Saxifragaceae

Heuchera Spp.

Alumroot Spp. (Unidentified)

HEVI

Asteraceae

Heterotheca villosa

Hairy False Golden Aster

HYFI

Asteraceae

Hymenopappus filifolius

Fineleaf Hymenopappus

IRMI

Iridaceae

Iris missouriensis

Rocky Mountain Iris

IVAX

Asteraceae

Iva axillaris

Povertyweed

x

LAOC

Boraginaceae

Lappula occidentalis

Western Sticktight/ Stickweed

x

LASC

Asteraceae

Laennecia schiedeana

Pineland Horseweed

x

LEDE

Brassicaceae

Lepidium densiflorum

Common Pepperweed

LERA

Brassicaceae

Lepidium ramosissimum

Many-branched Pepperweed

LEVI

Brassicaceae

Lepidium virginicum

Virginia Pepperweed

LEVU

Asteraceae

Leucanthemum vulgare

Ox Eye Daisy

LILE

Linaceae

Linum lewisii

Blue Flax

LIPU

Asteraceae

Liatris punctata

Gayfeather/ Blazing Star

LUAR

Fabaceae

Lupinus argenteus

Silvery Lupine

35

x

x

x
x
x

x

x
x
x
x

x

x

x

x
x

x

x

x
x

x

x

x

x

x

x

x
x

x
x
x
x

x
x

x

x

x

x

�LUWY

Fabaceae

Lupinus wyethii

Wyeth's Lupine

LYJU

Asteraceae

Lygodesmia juncea

Skeletonweed

x

MAPI

Asteraceae

Machaeranthera pinnatifida

Lacy Tansyaster

x

MARA

Liliaceae

Maianthemum racemosum

Feathery False Solomon's Seal

MARE

Berberidaceae

Mahonia repens

Oregon Grape

MATA

Asteraceae

Machaeranthera tanacetifolia

Tanseyleaf Tansyaster

MEAR

Lamiaceae

Mentha arvensis

Wild Mint

MEHU

Boraginaceae

Mertensia humilis

Mountain Bluebells

MELA

Boraginaceae

Mertensia lanceolata

Prairie Bluebells

MEOF

Fabaceae

Melilotus officinalis

Yellow Sweetclover

x

x

MESA

Fabaceae

Medicago sativa

Alfalfa

x

x

MILI

Nyctaginaceae

Mirabilis linearis

Narrowleaf Four o'clock

OECA

Onagraceae

Oenothera caespitosa

Tufted Evening Primrose

OECO

Onagraceae

Oenothera coronopifolia

Crownleaf Evening Primrose

x

OESU

Onagraceae

Oenothera suffrutescens

Scarlet Beeblossom

x

ORLU

Orobanchaceae

Orobanche ludoviciana

Louisiana Broomrape

ORLU2

Scrophulariaceae

Orthocarpus luteus

Yellow Owl's Clover

x

OXLA

Fabaceae

Oxytropis lambertii

Lambert Crazyweed

x

OXSE

Fabaceae

Oxytropis sericea

White Locoweed

PEBA

Scrophulariaceae

Penstemon barbatus

Beardlip Beardtongue

PECR

Scrophulariaceae

Penstemon crandallii

Crandall's Beardtongue

PHBE

Brassicaceae

Physaria bellii

Front Range Twinpod

x

PHHO

Polemoniaceae

Phlox hoodii

Spiny Phlox

x

PHLO

Polemoniaceae

Phlox longifolia

Longleaf Phlox

PIOP

Asteraceae

Picradeniopsis oppositifolia

Opposite Leaf Bahia

PLMA

Plantaginaceae

Plantago major

Common Plantain

PLPA

Plantaginaceae

Plantago patagonica

Woolly Plantain

POGR

Rosaceae

Potentilla gracilis

Slender Cinquefoil

POHI

Rosaceae

Potentilla hippiana

Woolly Cinquefoil

POOL

Portulacaceae

Portulaca oleracea

Common Purslane/ Hogweed

x

POPE

Polygonaceae

Polygonum persicaria

Spotted Ladysthumb

x

36

x

x

x
x
x

x

x

x
x
x

x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

x
x

x

x

x

x

x

x

x
x

x
x

x
x

x
x

x

x

x

x

x

x

x

�PSLA

Fabaceae

Psoralidium lanceolatum

Lemon Scurfpea

x

RACO

Asteraceae

Ratibida columnifera

Upright Prairie Coneflower

x

RHRO

Crassulaceae

Rhodiola rosea

King's Crown

x

SATR

Chenopodiaceae

Salsola tragus

Russian Thistle / Tumbleweed

x

SAXI

Saxifragaceae

Saxifraga Spp.

Saxifrage Spp. (Unidentified)

x

x

SEIN

Asteraceae

Senecio integerrimus

Lambstongue Ragwort

x

x

SELA

Crassulaceae

Sedum lanceolatum

Spearleaf Stonecrop

x

x

SENE

Asteraceae

Senecio Spp.

Groundsel Spp. (Unidentified)

SOMI

Asteraceae

Solidago missouriensis

Missouri Goldenrod

SONU

Fabaceae

Sophora nuttalliana

Silky Sophora

x

SOTR

Solanaceae

Solanum triflorum

Cutleaf Nightshade

x

x

SPCO

Malvaceae

Sphaeralcea coccinea

Scarlet Globemallow

x

x

SPFA

Euphorbiaceae

Spurge (Unidentified)

x

SYLA

Asteraceae

Symphyotrichum lanceolatum

White Panicle Aster

TAOF

Asteraceae

Taraxacum officinale

Dandelion

TAVU

Asteraceae

Tanacetum vulgare

Common Tansy

THAR

Brassicaceae

Thlaspi arvense

Field Pennycress

THRH

Fabaceae

Thermopsis rhombifolia

Golden Pea

TRDU

Asteraceae

Tragopogon dubius

Yellow Salsify

x

TRHY

Fabaceae

Trifolium hybridum

Alsike Clover

x

TRPR

Fabaceae

Trifolium pratense

Red Clover

x

URDI

Urticaceae

Urtica gracilis

Stinging Nettle

x

VIAM

Fabaceae

Vicia americana

American Vetch

x

VICI

Fabaceae

Vicia Spp.

Vetch Spp. (Unidentified)

WYAM

Asteraceae

Wyethia amplexicaulis

Mule-ears

ACGL

Aceraceae

Acer glabrum

Mountain Maple

AMAL

Rosaceae

Amelanchier alnifolia

Serviceberry

ARCA

Asteraceae

Artemisia cana

Silver Sagebrush

ARTR

Asteraceae

Artemisia tridentata

Big Sagebrush

x

ATCA

Chenopodiaceae

Atriplex canescens

Fourwing Saltbush

x

x

x
x

x

x

x
x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x
x
x
x

x

x

x
x
x
x

Shrubs

37

x
x

x

x

x

x

x

x

x

�CEMO

Rosaceae

Cercocarpus montanus

Mountain Mahogany

x

x

x

x

x

CHVI

Asteraceae

Chrysothamnus viscidiflorus

Douglas Rabbitbrush

x

x

x

x

x

DAFR

Rosaceae

Dasiphora fruticosa

Shrubby Cinquefoil

x

x

x

x

EREF

Polygonaceae

Eriogonum effusum

Spreading Buckwheat

x

ERNA

Asteraceae

Ericameria nauseosa

Rubber /Grey Rabbitbrush

x

x

x

x

HODU

Rosaceae

Holodiscus dumosus

Rockspirea

JUCO

Cupressaceae

Juniperus communis ssp. alpina

Common Juniper

x

x

JUSC

Cupressaceae

Juniperus scopulorum

Rocky Mountain Juniper

x

x

KRLA

Chenopodiaceae

Krascheninnikovia lanata

Winter Fat

x

x

PRAM

Rosaceae

Prunus americana

American Plum

x

x

PRVI

Rosaceae

Prunus virginiana

Western Chokecherry

x

x

PUTR

Rosaceae

Purshia tridentata

Bitter Brush

x

x

RHTR

Anacardiaceae

Rhus trilobata

Skunkbrush Sumac

x

x

RIAU

Grossulariaceae

Ribes aureum

Golden Currant

x

x

x

RICE

Grossulariaceae

Ribes cereum

Wax Currant

x

ROAR

Rosaceae

Rosa arkansana

Prairie/ Wild Rose

x

ROWO

Rosaceae

Rosa woodsii

Woods' Rose

RUID

Rosaceae

Rubus idaeus

Wild Red Raspberry

SALI

Salicaceae

Salix Spp.

Willow Spp. (Unidentified)

SYOC

Caprifoliaceae

Symphoricarpos occidentalis

Western Snowberry

TECA

Asteraceae

Tetradymia canescens

Spineless Horsebrush

x

XANT

Asteraceae

Xanthium spp.

Cocklebur sp.

x

YUGL

Agavaceae

Yucca glauca

Great Plains Yucca

x

ABLA

Pinaceae

Abies lasiocarpa

Subalpine Fir

PIEN

Pinaceae

Picea engelmannii

Engelmann Spruce

PIFL

Pinaceae

Pinus flexilis

Limber Pine

PIPO

Pinaceae

Pinus ponderosa

Ponderosa Pine

PIPU

Pinaceae

Picea pungens

Blue Spruce

POAN

Salicaceae

Populus angustifolia

Narrow-leaved Cottonwood

PODE

Salicaceae

Populus deltoides ssp. wislizenii

Rio Grande Cottonwood

x

x

x

x

x
x

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x

x

x

x

Trees

38

x
x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x

�POTR

Salicaceae

Populus tremuloides

Quaking Aspen

x

x

PSME

Pinaceae

Pseudotsuga menziesii

Douglas Fir

x

x

x

x

Escobaria vivipara

Pincushion Cactus

x

FUNG

Fungi

x

x

x

LICH

Lichen

x

x

x

x

x

MOSS

Moss

x

x

x

x

x

74

75

x

Cacti and Other Plants
ESVI

Cactaceae

OPFR

Cactaceae

Opuntia fragilis

Brittle Pricklypear

OPPO

Cactaceae

Opuntia polyacantha

Plains Pricklypear

PESI

Cactaceae

Pediocactus simpsonii

Mountain Ball Cactus

Total

x

x

x

x

Table A2. Plant species list for BTPD and GUPD sites on and off prairie dog colonies for 2013−2015.

39

x

x

33

217 species

x

91

127

127

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                  <text>Colorado Division of Parks and Wildlife
July 2015-June 2016

WILDLIFE RESEARCH REPORT
State of:
Cost Center:
Work Package:
Task No.:

Colorado
3420
1680
N/A

Federal Aid
Project No.

N/A

:
:
:
:

Division of Parks and Wildlife
Avian Research
Bird Conservation
Avian response to plague management on Colorado
prairie dog colonies

Period Covered: September 1, 2015 – August 31, 2016
Author: R. Yale Conrey
Principle Investigators: R. Yale Conrey, D. Tripp, J. Gammonley, CPW; A. Panjabi, E. Youngberg, Bird
Conservancy of the Rockies (formerly Rocky Mountain Bird Observatory).
Collaborators: Miranda Middleton (CPW), Bird Conservancy of the Rockies (formerly Rocky Mountain
Bird Observatory), City of Fort Collins Natural Areas and Utilities Programs, Michael Wunder and
Allison Pierce (University of Colorado Denver), Bureau of Land Management (Cañon City office), and
CPW wildlife managers, biologists, park rangers, and property technicians from Areas 1 and 4.
All information in this report is preliminary and subject to further evaluation. Information MAY
NOT BE PUBLISHED OR QUOTED without permission of the author. Manipulation of these data
beyond that contained in this report is discouraged.
EXTENDED ABSTRACT
Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and the largest
limiting factor in recent decades appears to be the high mortality and colony extirpation associated with
plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Prairie dog colonies support a
diverse community of associated species, many of which are not susceptible to plague but may be
indirectly affected. In order to conserve prairie dogs and species associated with their colonies, principally
the black-footed ferret (Mustela nigripes), a plague vaccination program is being developed (Fig. 1a),
which may also benefit a suite of species (Fig. 1b, d) listed in the Conservation Plan for Grassland
Species in Colorado (Colorado Division of Wildlife 2003) and the Colorado Sagebrush Conservation
Assessment and Strategy (Boyle and Reeder 2005). CPW is involved in a multi-state, multi-agency study
of prairie dogs and associated small mammal species; the objective is to determine whether survival is
enhanced by the experimental vaccine compared to use of placebo or insecticide to control fleas, an
important vector of plague. They are also interested in how patterns of prairie dog abundance and
occupancy change when plague epizootics occur in plots receiving different treatments. As an extension
to this project, we initiated research in 2013 on the effects of plague management on avian species
associated with prairie dog colonies, with particular focus on species of concern. Our main long-term
objective is to determine whether areas treated to control plague differ from untreated areas in their avian
communities. Shorter-term objectives are to 1) Determine how plague affects avian species and their

1

�predators associated with prairie dog colonies; 2) Determine whether avian species associations exist for
colonies of Gunnison’s prairie dogs (C. gunnisoni: GUPD); most evidence for associated species comes
from black-tailed prairie dogs (C. ludovicianus: BTPD); 3) Determine whether insecticidal dusting
influences bird density or nest survival; 4) Evaluate the importance of covariates such as weather and
cattle grazing.
Study areas in 2013–2015 included BTPD colonies in north-central Colorado and GUPD colonies
in west-central Colorado, but in 2016, we replaced the western Colorado location with South Park, a high
elevation site in central Colorado. Study sites were characterized by short and mid-grasses, dominated by
blue grama (Bouteloua gracilis). Our first three years of research (2013−2015) coincided with Wildlife
Health’s 3-year efficacy trials for an oral plague vaccine for prairie dogs (Fig. 1a). In Colorado, CPW
Wildlife Health Program staff led by Dan Tripp surveyed colonies before and after bait distribution and
conducted a mark-recapture study of prairie dogs and associated small mammal species. Treated areas
were arranged in triplets with one vaccine, placebo, and dusted site per group; baited sites were assigned
vaccine or placebo baits in a blind procedure. In 2016, CPW Wildlife Health did further research on bait
distribution and design, but the vaccine was in the initial stages of becoming a management tool, more
broadly used in ferret reintroduction sites and in some high priority GUPD colonies. We continued work
at our BTPD site in 2016, and with our collaborators from Bird Conservancy of the Rockies, we now
have 11 years of point count data spanning two plague cycles. In 2015, we completed three years of work
comparing on- and off-colony study areas at GUPD sites in western Colorado, and in 2016 shifted our
focus to South Park, an area with locally high densities of mountain plover (Charadrius montanus) and a
possible reintroduction site for GUPD, which have been extirpated from most formerly occupied areas.
South Park contains several small active GUPD colonies, and large areas of potentially suitable habitat
with no prairie dogs. We continued to conduct avian point counts in 2016, and bird occupancy, density,
and species composition will be estimated from these data. Summer and winter counts of diurnal raptors
and early season passive and call-playback surveys of mountain plover (Charadrius montanus) and
burrowing owls (Athene cunicularia: Fig. 1d) were used to sample high priority species that are rarely
detected during point counts. We searched for nests of these species as well, but did not repeat the
intensive passerine nest monitoring program of previous years. We continued to collect remote camera
data, which will be used to estimate summer and winter on-colony occupancy rates for mammalian
carnivores, including coyotes, badgers, and swift fox (Fig. 1e). Finally, we again quantified percent
ground cover, visual obstruction (Fig. 1c), and species composition of vegetation at points, nests, and
along randomly located transects.
Since fall 2013, plague epizootics have impacted ~80% of the BTPD study area. In September
and October 2014 and 2015, black-footed ferrets were released in three BTPD study colonies.
Precipitation (Fig. 2) has varied greatly during this study, particularly on BTPD sites, from slightly dry to
very wet, compared to the 30-year average. At this point, all data analyses are preliminary. From 2013 –
2016, we detected 137 bird species during the breeding season. During BTPD colony surveys, at least
three bird species (Brewer’s blackbird Euphagus cyanocephalus, horned lark Eremophila alpestris, and
vesper sparrow Pooecetes gramineus) appeared to have higher detection rates on active prairie dog
colonies, while three species (European starling Sturnus vulgaris, grasshopper sparrow Ammodramus
savannarum, and lark bunting Calamospiza melanocorys) appeared to have higher detection rates on
colonies with extinct or severely reduced prairie dog populations following plague outbreaks (Table 2).
Trend analysis of point count data from 2006−2016, which included two plague events, is ongoing with
our collaborators. We documented 230 plant species over four years. Colonies contained a higher bare
ground component with lower vegetation heights than off-colony sites, with shortgrasses dominant at
BTPD sites, short and mid-grasses at GUPD sites in South Park, and a more even distribution of grasses,
forbs, and shrubs at GUPD sites in western Colorado. Vegetation species composition was highly variable
at BTPD sites over time, with increasing grass cover and decreasing bare ground following an El Niño
event associated with high rainfall during the growing season (Table 4, Fig. 2). We detected 18 raptor

2

�species during on- and off-colony counts. Burrowing owls, northern harriers Circus cyaneus, ferruginous
hawks Buteo regalis (Fig. 1b), and rough-legged hawks Buteo lagopus were detected only on prairie dog
colonies, and half the raptor species we observed used on-colony areas more than off-colony areas during
our surveys, with the remainder appearing to show no preference or having low sample size (Table 6).
Patterns in the raptor data on active colonies vs. plagued colonies have not yet been examined. Despite
three rounds of nest searching for mountain plover in South Park, nests were found only in a known area
of high density in James Mark Jones State Wildlife Area, which was monitored by our collaborators at
University of Colorado − Denver. However, the number of burrowing owl nests at our BTPD site has
doubled during each year of our study following an El Niño event and widespread plague, which may
have created conditions with high prey and burrow availability in a landscape that continues to contain
many active (if small) prairie dog colonies. Finally, in &gt; 10.8 million remote camera photos, we have
documented use of colonies by 8 species of mammalian carnivores, with increasing swift fox activity over
the course of this study. Swift fox occurred only on BTPD colonies and badgers were more commonly
detected there, while coyotes were equally common across all sites on BTPD and GUPD colonies. These
species are known nest predators with large home ranges and carry fleas that could potentially move
plague across a broad area.
This was the fourth year of data collection on this project, and it will likely take additional years
of monitoring to detect potential changes in the avian community caused by different types of plague
management, as treated colonies no longer experience extinction events. Regardless of the efficacy of
plague vaccine versus insecticide in reducing plague impacts, the vaccine will continue to be an important
tool due to cost/benefit of its use and increasing evidence that fleas are evolving resistance to
deltamethrin. Preliminary data suggest that bird densities do vary according to the status of prairie dogs
on a colony, with differences between active colonies and those with extirpated or severely reduced
prairie dog populations following plague outbreaks. Vegetation surveys have also identified differences
between on- and off-colony areas. Raptor and camera data collection will continue through winter
2016/2017. During the 2017 breeding season, we hope to continue collecting point count, raptor count,
and vegetation data on BTPD colonies with different activity levels, following the extensive 2013−2015
plague outbreak. Beyond that, there are several possibilities for continued research. The GUPD
reintroduction planned for South Park is on hold until new funding is obtained; our avian work on GUPD
sites may similarly go on hiatus. We may work more in ferret reintroduction sites, on private lands, or in a
new location with little or no plague management (such as Pawnee National Grassland) for comparison
with our current BTPD site north of Fort Collins.

3

�COLORADO PARKS AND WILDLIFE RESEARCH REPORT
AVIAN RESPONSE TO PLAGUE MANAGEMENT ON COLORADO PRAIRIE DOG
COLONIES
REESA C. YALE CONREY
INTRODUCTION
Wildlife diseases are important to conservation and population dynamics of susceptible species
and may also have large indirect effects on non-susceptible species (Antolin et al. 2002). Introduced
pathogens have the potential for far-reaching effects on native ecosystems that go beyond the mortality of
infected individuals, particularly when a keystone species (Paine 1969) or ecosystem engineer (Jones et
al. 1994) is infected. Range-wide declines in prairie dog (Cynomys sp.) populations have occurred, and
the largest limiting factor in recent decades appears to be the high mortality and colony extirpation
associated with introduced plague (Antolin et al. 2002), caused by the bacterium Yersinia pestis. Plague
epidemics were first reported in the western United States in 1899 (Dicke 1926) and in northern Colorado
in 1948 (Ecke and Johnson 1952). Instead of living in extensive colonies as they once did, prairie dogs
exist in metapopulations of smaller colonies that periodically go extinct and are recolonized (Antolin et al.
2002, Stapp et al. 2004). Prairie dog colonies support a diverse community of associated species
(Lomolino and Smith 2004, Smith and Lomolino 2004, Hardwicke 2006, Stapp et al. 2008), many of
which are not susceptible to plague but may be indirectly affected.
In order to conserve prairie dogs and species associated with their colonies, principally the blackfooted ferret (Mustela nigripes), a plague vaccination program is being tested (Fig. 1a). Additional
species that may benefit from this program include those listed in the Conservation Plan for Grassland
Species in Colorado (Colorado Division of Wildlife 2003): burrowing owl (Athene cunicularia: BUOW,
Fig. 1d), mountain plover (Charadrius montanus: MOPL), ferruginous hawk (Buteo regalis: FEHA, Fig.
1b), and swift fox (Vulpes velox) and in the Colorado Sagebrush Conservation Assessment and Strategy
(Boyle and Reeder 2005): Brewer’s sparrow (Spizella breweri: BRSP), green-tailed towhee (Pipilo
chlorurus: GTTO), sage sparrow (Artemisiospiza belli: SAGS), sage thrasher (Oreoscoptes montanus:
SATH), and vesper sparrow (Pooecetes gramineus: VESP), as well as BUOW. BUOW and MOPL are
known to decline or disappear on colonies that are not reoccupied by prairie dogs after plague epizootics
(Butts and Lewis 1982; Sidle et al. 2001; Augustine et al. 2008; Tipton et al. 2008; Conrey 2010), and
horned lark (Eremophila alpestris), McCown’s longspur (Rhynchophanes mccownii), golden eagle
(Aquila chrysaetos), prairie falcon (Falco mexicanus), and other birds may benefit from active colonies.
From 2013‒2015, researchers in several western states field-tested the uptake and efficacy (SPV
Subcommittee 2011) of a new sylvatic plague vaccine (SPV) for prairie dogs (Rocke et al. 2010); the
objective is to determine whether survival of prairie dogs and other small mammals is enhanced by the
experimental vaccine compared to use of placebo or insecticide to control fleas, an important vector of
plague. In Colorado, CPW researchers led by Dan Tripp surveyed colonies before and after bait
distribution and conducted a mark-recapture study of prairie dogs and associated small mammal species
(Tripp and Rocke 2012). Data analyses are ongoing. As an extension to this project, we initiated research
in 2013 on the effects of plague management on avian species associated with prairie dog colonies, with
particular focus on species of concern. Our main long-term objective is to determine whether areas treated
to control plague differ from untreated areas in their avian communities. Shorter-term objectives are to 1)
Determine how plague affects avian species and their predators associated with prairie dog colonies; 2)
Determine whether avian species associations exist for colonies of Gunnison’s prairie dogs (C. gunnisoni:
GUPD); most evidence for associated species comes from black-tailed prairie dogs (C. ludovicianus:
BTPD; Lomolino and Smith 2004, Smith and Lomolino 2004); 3) Determine whether insecticidal dusting

4

�influences bird density or nest survival; 4) Evaluate the importance of covariates such as weather and
cattle grazing.
We continued work at our BTPD site in 2016 and have now collected one year of pre- and three
years of post-treatment data on birds. Our collaborators at Bird Conservancy of the Rockies have a point
count dataset at this site extending back to 2006. This location north of Fort Collins is also a ferret
reintroduction site, and CPW Wildlife Health has continued to research bait design and distribution there.
In 2015, we completed three years of work comparing on- and off-colony study areas at GUPD sites in
western Colorado, and in 2016 shifted our focus to South Park, an area with locally high densities of
mountain plover and a possible reintroduction site for GUPD, which have been extirpated from most
formerly occupied areas.
METHODS
Study Area
Study areas included BTPD colonies in north-central Colorado and GUPD colonies and a
possible reintroduction site in central Colorado. Baited sites received either vaccine or placebo baits in a
blind procedure. Project areas that were selected for the prairie dog vaccine study had adequate numbers
of prairie dogs and good access.
BTPD (Larimer and Weld Co.) – Study colonies were located in Larimer and Weld Co. adjacent
to the Wyoming border at Soapstone Prairie Natural Area (SOAP), managed by City of Fort Collins
Natural Areas Program and Meadow Springs Ranch (MSR), managed by City of Fort Collins Utilities
Department. These sites are characterized by shortgrass and mixed-grass prairie dominated by grasses
(blue grama Bouteloua gracilis and buffalograss B. dactyloides) with smaller amounts of native (scarlet
globemallow Sphaeralcea coccinea) and non-native forbs, shrubs, and cactus. Sites were sometimes
grazed by cattle at low densities, and some non-baited sites were dusted with deltamethrin to control fleas
(and plague). There was much more cattle grazing in 2014 − 2016 than in 2013, because 2014 – 2015
were wet years (Fig. 2), and the high levels of forage persisted into 2016. Both properties were closed to
recreational shooting. Mark-resight estimates of BTPD density on shortgrass prairie in Colorado average
approximately 10 prairie dogs/acre (Magle et al. 2007).
Bird, vegetation, and camera surveys were conducted on 10 SOAP colonies and 22 MSR
colonies. There were nine vaccine project areas where raptors, predators, and passerine nests were
surveyed: three prairie dog complexes each received vaccine, placebo, and dusting treatments from 2013
− 2015 (3 treatments*3 complexes = 9 project areas). In 2016, colonies near ferret reintroduction sites
were dusted and vaccinated, the other MSR treatment areas received only vaccine, and the remaining
colonies within the study area received no treatment. The following colony areas were mapped prior to
the 2013 season, but active acreage was significantly less by 2016, following plague epizootics: 1) The
Jack Springs (Jac) colony spanning the SPNA/MSR border contained 100 vaccine acres, 100 control
acres, and ~280 dusted acres separated by 200 - 400 m buffer zones. 2) The Barton complex in MSR
contained ~130 vaccine acres and ~180 control acres, encompassing much of the Barton south and west
colonies (BarS and BarW). Raptor, predator, and passerine nest surveys were also done in the 140 acre
Barton east colony (BarE), which received no treatment. 3) The Ferret Center complex in MSR contained
40 vaccine acres, 40 control acres, and ~478 dusted acres, encompassing the entire North Bulger south
colony and half of the Ferret Center (Fer) colony, with a 400 m buffer zone separating those treatments.
GUPD (South Park) – Study sites were located in South Park (Park Co.), which contains several
small active GUPD colonies and large areas of potentially suitable habitat with no prairie dogs. South
Park sites were managed by the Bureau of Land Management (BLM) and Colorado Parks and Wildlife
(James Mark Jones State Wildlife Area, Tomahawk SWA, Charlie Meyers SWA, Spinney Mountain
SWA, Spinney Mountain State Park, and Eleven Mile SP). These high elevation sites (~3000 m) are

5

�characterized by shortgrass and mixed-grass prairie dominated by grasses (blue grama and plains
bluegrass Poa arida) with a relatively high amount of bare ground and forb cover (fringed sage Artemisia
frigida). This is a large open mountain “park” that is isolated by surrounding forested areas and higher
mountain peaks. Sites were sometimes grazed by cattle at low densities, and all sites received vaccine
baits and were dusted with deltamethrin to control fleas (and plague) in 2016. Shooting was uncommon at
our sites. The study area is within the known range of plague (Tripp et al. unpublished data).
Bird, vegetation, and camera surveys were conducted on five colonies and six plots within the
proposed reintroduction area. Because of their small size and conservation importance, entire colonies
were treated with both vaccine and insecticide. Colonies were located within 2 km of Spinney Mountain
and Elevenmile Canyon Reservoirs: Spinney South (92 acres), Spinney Dam (28 acres), Charlie Meyers
(94 acres), Cross Creek (29 acres), and 11 Mile (84 acres). James Mark Jones and Tomahawk SWAs are
17,429 and 1,655 acres, respectively, so we sampled six plots within the SWAs. Three 1 km2 plots were
randomly located within the area where Allison Pierce (UC-Denver) found the majority of her plover
nests in 2015. Three additional plots (~ 1.5 km2) were non-randomly assigned to the remaining portions
of JMJ and Tomahawk that we mapped (with the assistance of Michelle Flenner in CPW’s GIS group) as
potentially suitable for mountain plover and GUPD, based on terrain and vegetation cover.
Avian Point Counts
Each point was surveyed once in May – June. At BTPD study sites, a 250 m grid of points had
already been established and surveyed by BCR from 2006−2013. At GUPD study sites, we created a 250
m grid of points and surveyed those within 100 m of colonies and within the selected plots on JMJ and
Tomahawk SWAs. Points were considered to be “on colony” if located within 100 m of the boundary and
with good views of the colony. Most point counts were conducted between dawn and 10:00 and were
never conducted in rain, hot temperatures (above 30°C), or high winds that made it difficult to hear birds.
Regardless of time or weather, we did not conduct counts if we noticed that bird activity (especially
singing and calling) was dropping off.
In addition to these point counts, we conducted separate counts for burrowing owls, which are
poorly detected in regular point counts. We used a similar protocol for MOPL and BUOW in 2015, but
this did not yield many MOPL nests, and following three years of very limited MOPL detections, we did
not repeat that protocol for MOPL in 2016. We did a 3 min. passive survey followed by 3 min. of callplayback at grid locations spaced at least 700 m to avoid calling in birds and double-counting them, so
that the whole colony was visible within 500 m of a survey point. The call-playback sequence was 3 min.
of silence and 3 min. of owl calls (two 30-sec. segments of coo call and 30-sec. of alarm call, each
separated by 30-sec. of silence). Surveys were conducted from trucks or ATVs where possible, because
owls are much less likely to be disturbed by observers in vehicles than by observers on foot. Where not
possible, surveys on foot were completed from colony edges or other locations prior to moving through
them and disturbing owls. BUOW counts were conducted three times within a 2-week period by at least
two different observers, in order to facilitate analysis using a removal method, and they were immediately
followed by nest searching where owls were detected.
We conducted 6-min.breeding season point counts, recording each bird’s species, horizontal
(radial) distance, sex (if known), use of the prairie dog colony (yes or no), minute of detection (1 – 6), and
how it was detected (visual, singing, calling, drumming, fly-over, or other). Membership in a cluster was
noted, typically for male-female pairs. After completing the bird count, we recorded weather and site
characteristics at each point, including time, temperature, wind speed, cloud cover, management type
(typically cattle grazing, sometimes dusting) and whether it was current, from this season or last season,
and the presence of excessive noise, roads (primary or secondary), and cliffs or rock outcroppings within
100 m. Within a 50 m radius, we recorded characteristics of tall nesting and perching substrate, including
percent cover, height, and dominant species for overstory plants ≥ 3 m and shrubs &gt; 30 cm but &lt; 3 m.

6

�Within a 5 m radius, we recorded characteristics of ground cover, including percent cover of grasses
(including sedges and rushes), forbs, shrubs, cactus, litter, bare ground, rock, scat, other cover such as
lichen, and exotic species. We also recorded the dominant exotic species, and the mean height and species
of the dominant grass.
We used the point count protocol designed for Integrated Monitoring of Bird Conservation
Regions (IMBCR: Hanni et al. 2012), except that we conducted bird surveys prior to vegetation surveys.
This helped to ensure that birds displaced by the observer, including those located at the point itself, were
recorded. We also altered IMBCR vegetation survey protocols slightly to make the protocol specific to
low stature prairie dog colonies, shortgrass prairie, and sagebrush systems. This was designed to be a
quick, visual assessment; a more involved protocol using a Daubenmire frame and robel pole was used on
transects and at nests.
Vegetation Transects
In addition to a visual assessment of vegetation at points, we sampled vegetation on transects and
at nests. We completed two transects on all colonies and South Park plots, except that only one transect
could be located on the smallest colonies. To locate each transect, we randomly chose a start and an end
point from those used in avian point counts. From the start point, we walked along the bearing toward the
end point for 240 m, stopping every 20 m to collect vegetation data for a total of 13 points per transect,
except on very small colonies. Transect data were collected during the growing season, mainly from midJune through August.
At each stop point, we recorded the presence of active or inactive prairie dog burrows within 10
m, ground cover, dominant species, and visual obstruction (Fig. 1c). Percent ground cover was measured
within a 50 cm square Daubenmire frame. We recorded the percent bare ground, rock, litter, scat, grass
(including sedges and rushes), forb, shrub, cactus, exotic, and other cover. We also recorded the dominant
species for each plant category present in the frame. Visual obstruction data were recorded by holding a
robel pole at the stop point on the transect and making observations from a distance of 4 m in each
cardinal direction with eye level at 1 m. The observer then noted which portions of the 122 cm (4 ft) pole
were obstructed by vegetation, identified the plant species obstructing the pole, and noted whether the
pole was substantially obstructed or was covered by just a wisp of vegetation (typically a blade of grass).
We estimated the height of any structures taller than the pole.
Raptor Counts
Raptors were sometimes sighted during avian point counts, but point counts are not an ideal
method for detecting raptors or other uncommon species. Therefore, we chose 1 – 2 locations per vaccine
project area and plot, positioning observers so that the entire treatment area could be viewed
simultaneously. We conducted 30-min. raptor counts, recording each bird’s species, horizontal (radial)
distance, sex (if known), time of entry and exit, and behavior (high soar, low soar, directed flight, hover,
dive, call, perch, or nest). Membership in a cluster was noted, typically for male-female pairs. This
produces a time metric for assessing raptor use of treatment areas and colonies. At the start and end of the
count, we recorded weather characteristics, including time, temperature, wind speed, and cloud cover.
Raptor counts were conducted after 9:30 from November to early March (wintering) and April to August
(breeding) and were never conducted in rain. As a supplement to the formal raptor counts, we recorded
incidental raptor observations.
Nest Searching and Monitoring
We searched for mountain plover and burrowing owl nests throughout the study area through
visual observation of adult birds, typically in the morning and not in rainy conditions or high winds.
Target search regions included areas where MOPL and BUOW were detected during call-playback
surveys, areas with nests in previous years, and other areas with appropriate habitat. MOPL nest in

7

�scrapes on the ground in areas with a relatively high bare ground component. BUOW nest in prairie dog
burrows, often near colony edges and in burrows with low to moderately-sized mounds. Because these
species react more to humans on foot than to vehicles, we conducted surveys from a vehicle whenever
possible. Where ATV access was possible, we nest searched for MOPL using two ATVs with a 30 m rope
suspended between them. Bungies on each end of the rope allowed observers to keep the rope taut and
watch for running birds. When MOPL were detected, we observed the bird, sometimes backing away
from the site, and waited for the bird to sit down on a nest. When BUOW were detected, we searched for
nests in the vicinity of their perching location; typically males perched conspicuously near the nest
burrow during the day.
Additional nests were found during point counts and nest monitoring. When we were unable to
find a nest during the initial search, we marked the GPS location and returned at a later date. We likely
found the majority of BUOW nests on the landscape using this method (Conrey 2010). We also
monitored all other raptor nests that we found. We searched for passerine nests in 2013 – 2015 but did not
repeat this intensive protocol in 2016.
MOPL nests were defined as structures containing at least one egg. Because BUOW nests are
underground, we defined their nests as burrows with shredded manure present at the entrance (Garcia and
Conway 2009), with feathers, regurgitated pellets, and prey remains providing additional evidence of a
nest attempt. Some BUOW burrows were probed with an electronic camera on the end of a structure
similar to a plumbing snake (Peeper System 2.3, Sandpiper Technologies). At the time of nest discovery,
we recorded the same weather information that we recorded at points. We also did a rapid visual
assessment of vegetation, with more detailed data collected at nest completion when overheating of eggs
and nest abandonment was no longer a concern. We described the nest structure and vegetation
immediately around the nest and estimated vegetation height, percent bare ground within a 1 m radius,
and whether all, ≥ 50%, &lt; 50%, or none of the nest could be seen from vantage points 5 m to the north
and south. BUOW nests were marked with brightly painted wooden stakes placed 10 m north of the nest
burrow. Other raptor nests were unmarked, but they were very easy to locate. We collected any pellets
that we observed near BUOW nests for possible future dietary analysis.
Nests were monitored at least once per week. Starting with the first visit when the nest was
discovered, we recorded the time, any management activities (such as cattle grazing), age of juveniles,
and number of eggs (where they could be seen), juveniles, and adults present. Juveniles were aged
according to keys for BUOW (Priest 1997) and by comparison with the presumed hatch date for other
raptors, based on our observations.
Non-BUOW raptor nests were considered successful if at least one fully-feathered juvenile left
the nest. Evidence of success included juveniles outside the nest, and/or displaying and calling adults,
coupled with an intact nest and appropriate timing based on nest age. BUOW nests were considered
successful when at least one fledgling aged ≥ 35 days was observed (Thomsen 1971, Davies and Restani
2006, Conrey 2010), because they leave the nest burrow (but may return to it many times) at 10 – 14 days
and well before flight or independence are attained. Failed nests were destroyed, contained broken eggs,
and/or had eggs or nestlings that disappeared before their expected fledge date. For analysis purposes,
nests with unknown fate will have their histories truncated back to the last date when the nest was active
and will be coded as successful at that time.
At nest completion, we recorded the same vegetation data that were collected at points along
vegetation transects: presence of prairie dog burrows within 10 m, percent ground cover, and visual
obstruction. We placed the Daubenmire frame at 1 m in each cardinal direction and observed the robel
pole (placed at the nest) from 4 m in each cardinal direction, producing four readings of each metric.

8

�Remote Cameras
Remote cameras (Reconyx Hyperfire Covert IR model PC800) were placed in each vaccine
project area to document use by mammalian predators and other wildlife. In 2013, we had just one camera
per treatment, but we increased the number of remote cameras on BTPD colonies in 2014 – 2016 to better
sample their larger size relative to GUPD colonies. We also deployed two cameras in the larger South
Park colonies and plots. These cameras take photos when triggered by motion from an object that is
warmer than ambient temperature. Camera locations were selected to maximize the potential for
detections of mammalian predators without the use of baits or lures, which might have acted as attractants
and altered the sampling region beyond treatment areas and prairie dog colonies. Cameras were
positioned along game trails, aimed at coyote height, and tested before they were armed. Cameras
targeted water sources, fence lines, and other landscape features and were positioned in space such that
the entire treatment was sampled as thoroughly as possible. We set the cameras to take three photos when
triggered, with no quiet period between photos.
Most cameras were deployed in April – May, and most of the cameras at BTPD sites were left in
place and operated year-round. We checked batteries and SD cards at least 3 times during summer and
once during winter, but most camera checks were more frequent (once or twice per month from May September), particularly when cows were present on a site, as they sometimes disrupted camera
operation. Cameras were removed from GUPD sites in September, prior to the advent of winter weather
and GUPD hibernation. As a supplement to the camera data, we recorded incidental observations of
predators such as coyotes, foxes, and badgers.
Databases
We designed a database for this project using Microsoft SQL Server 2012 with the data entry
interface in Microsoft Access 2007. The database was designed by R. Conrey and D. Conrey, a
professional database developer who volunteered his time, to run on the Fort Collins CPW research
server. This allows multiple users to simultaneously access the database, while providing for daily backups and improved data security. Users can access a master list of codes for vegetation species, bird
species, management types, observers, sites, colonies, and points that if changed, will update throughout
the database. Users also access data entry forms for each data type described above, except for photo data.
The Reconyx photo database (Newkirk 2014) catalogs photos and stores the metadata associated
with them, displaying (but not storing) the photos themselves within Access forms. Users identify species
in photos using stand-alone modules which are then loaded into the database. Each photo is examined by
at least two observers, and a referee (R. Conrey or field crew leader) resolves any conflicts in IDs.
Identification is ongoing.
Data Analysis
Thus far, all data have been entered and summarized, but data proofing is ongoing and statistical
analyses have not yet been completed. For point counts, we calculated use rate for each species by
dividing the number of detections by the number of points per site. We completed bird and vegetation
species lists and summarized ground cover data collected at transects. For raptor counts, we calculated a
proportional use index, dividing the usage minutes by the total survey minutes for each site. Apparent
nest success was calculated as the proportion of nests fledging at least one chick. Naïve (minimum)
occupancy estimates were calculated for carnivores based on remote camera photos taken during 2-week
intervals starting 1 April of each year, separated into breeding and non-breeding periods. Data will
eventually be analyzed using Program DISTANCE to estimate density from point counts, Program
MARK to estimate nest survival and occupancy from point counts and camera data, and R for other data
types.

9

�RESULTS
We have collected one year of pre-treatment data and three years of post-treatment data at BTPD
sites. For GUPD sites, we completed 3 years of work at Gunnison Basin and the Woodland Park area in
2015 and began work in South Park in 2016, prior to a planned GUPD reintroduction that is now on hold
until funding can be obtained. Since fall 2013, plague epizootics have occurred across ~80% of the BTPD
study area at 21 colonies. During each of the first three years our study, one of the three pairs of BTPD
treatment sites experienced a plague outbreak, spanning the entire treatment area by fall 2015, aside from
a dusted region around the USFWS black-footed ferret breeding center. Plague occurred at both the baited
sites in each pair, meaning that both the control and vaccine areas experienced outbreaks. This epizootic
started in fall 2013 shortly after vaccine drop, so plague was present in the system prior to vaccination.
Colonies that experienced epizootics in 2013 experienced total or near extirpation of prairie dogs, but
beginning in 2014, treated areas experienced losses of ~50 – 95% (two of these were treated with placebo
baits). All of these areas had small numbers of prairie dogs with increasing abundance within 1 - 2 years
of the outbreak, but populations were severely reduced compared pre-plague levels. Each year in
September 2014 − 2016, black-footed ferrets were released in two BTPD study colonies (the Roman and
Brannigan colonies in the northwest part of Soapstone Prairie Natural Area). In October 2014 and 2016,
additional ferrets were released within the dusted part of a treatment colony (the Ferret Center colony in
the southeastern part of Meadow Springs Ranch), which is 0.5 km from the nearest paired baited site and
plague epizootic. 68 total ferrets were released on these properties, and a small amount of reproduction
has been documented.
Although 2013 and 2016 were fairly normal to slightly dry, 2014 and 2015 were very wet
summers at the BTPD site compared to the 30-year average (Fig. 2). Normally dry playas and streambeds
were full, grasses were tall and formed seedheads in June, and a different suite of species was observed,
including a large flush of growth in species normally absent or a minor component of the prairie, such as
six weeks fescue (Vulpia octoflora) and wooly plantain (Plantago patagonica). In 2016, these species
were more common than blue grama grass or the forbs more commonly seen in previous years. We also
saw a huge influx of lark buntings (Calamospiza melanocorys), which typically nest in or near taller
vegetation than is typically found on these BTPD colonies; we had two nests in 2013, 69 nests in 2014,
and 39 nests in 2015, making lark buntings the most abundant breeders at our sites, along with McCown’s
longspurs.
We conducted 1,734 avian point counts in 2013 − 2016 (more than 2,000, if repeat counts are
included) and detected 137 bird species during the breeding season (Table 1, App. 1). The most common
birds detected were horned lark, western meadowlark (Sturnella neglecta), lark bunting, and McCown’s
longspur at BTPD sites and Brewer’s sparrow, vesper sparrow, horned lark, western meadowlark, greentailed towhee, common raven (Corvus corax), and sage thrasher at GUPD sites, in that order. We detected
85 species on BTPD colonies, 84 species on GUPD colonies, and 82 species off GUPD colonies. Baird’s
sparrows (Ammodramus bairdii) were first detected at our BTPD sites in 2015 and appear to be becoming
more widely distributed. Occupancy and density analyses have not yet been completed, but we have
compared use rates (number of detections per point) across BTPD colonies with differing prairie dog
activity status. During BTPD colony surveys, at least three bird species (Brewer’s blackbird Euphagus
cyanocephalus, horned lark Eremophila alpestris, and vesper sparrow Pooecetes gramineus) appeared to
have higher detection rates on active prairie dog colonies, while three species (European starling Sturnus
vulgaris, grasshopper sparrow Ammodramus savannarum, and lark bunting Calamospiza melanocorys)
appeared to have higher detection rates on colonies with extinct or severely reduced prairie dog
populations following plague outbreaks (Table 2). In future density models, we will test the importance
of these factors along with other covariates such as weather, vegetation characteristics, cattle grazing, and
predator occupancy rates.

10

�We characterized vegetation at 1,734 point count locations, 607 nests, and ~5100 stop points
along 404 transects in 2013 – 2016 and documented 230 species (Table 1, App. 2). Vegetation transect
data (Table 3) suggested that BTPD colonies were dominated by grasses (mainly blue grama until 2016,
when six weeks fescue was more common), litter, and bare ground, with triple the grass coverage of
GUPD sites and rapidly increasing grass cover (doubled by 2016) during and after the El Niño event of
2014 – 2015 (Table 4, Fig. 2). We observed half the litter, a third of the bare ground, and a temporary
increase in forb coverage at BTPD sites over the same time period (Table 4). GUPD sites in South Park
were also dominated by grasses but had more forb cover and bare ground (Table 3): GUPD colonies had
more bare ground and less forb cover than off-colony areas. Exotic cover was &lt; 1% at all sites (Table 3).
Visual obstruction by vegetation (Fig. 1c) was ≤ 9 cm at all sites in 2016. Vegetation heights increased
each year of our study on BTPD colonies, with grasses responsible for most of the obstruction. Forbs had
the highest species richness, followed by grasses and shrubs. Dominant plant species of each type are
listed in Table 5, with a complete plant species list in App. 2.
We conducted raptor counts at 86 locations for a total of 26,480 minutes (Table 1) and detected
18 species from 2013 – 2016 (Table 6). Burrowing owls, northern harriers Circus cyaneus, ferruginous
hawks Buteo regalis (Fig. 1b), and rough-legged hawks Buteo lagopus were detected only on prairie dog
colonies, and half the raptor species we observed used on-colony areas more than off-colony areas during
our surveys, with the remainder appearing to show no preference or having low sample size (Table 6).
During winter counts on BTPD colonies, burrowing owls, Swainson’s hawks, and turkey vultures were
replaced by rough-legged hawks, and ferruginous hawks and northern harriers became more common
than they were during summer. Relationships between raptor use and plague have not yet been analyzed.
We monitored 64 raptor nests in 2016 (Table 1), mainly burrowing owl nests, which had an
apparent nest success rate of 76% (Table 7). Despite three rounds of nest searching for mountain plover in
South Park, nests were found only in a known area of high density in James Mark Jones State Wildlife
Area, which was monitored by our collaborators at University of Colorado − Denver. The number of
burrowing owl nests at our BTPD site has doubled during each year of our study (Table 7) following an
El Niño event and widespread plague. Daily nest survival will be estimated using known fate models in
Program MARK, and the importance of covariates such as plague, weather, vegetation characteristics,
cattle grazing, and predator occupancy rates will be explored.
We deployed 38 remote cameras in 2016 that took 339,006 photos from April to August, with &gt;
10.8 million photos analyzed since 2013 (Table 1). BTPD cameras are deployed year-round, because
BTPDs do not hibernate, while GUPD cameras were deployed from May − September. As expected,
many photos recorded prairie dogs, cows, pronghorn (Antilocapra americana), and rabbits. We have
documented coyote (Canis latrans), swift fox (Vulpes velox), badger (Taxidea taxus), striped skunk
(Mephitis mephitis), red fox (V. vulpes), bobcat (Lynx rufus), black-footed ferret, and raccoon (Procyon
lotor) use of vaccine project areas (listed by number of occurrences in our photos), and one black bear
(Ursus americanus) using a proposed GUPD reintroduction site in South Park. We observed numerous
instances of cooperative hunting behavior between coyotes and badgers in our photos (Fig. 1e). Swift fox,
which appear to have increased steadily from 2013 – 2016, and skunks occurred only on BTPD colonies
and badgers were more commonly detected there, while coyotes were equally common across all sites on
BTPD and GUPD colonies (Table 8). Overall 2-week detection rates per site (naïve occupancy estimates)
for the three most common carnivores ranged from 3% for badgers on both BTPD colonies (April – July
2014) and GUPD colonies (August – Sept 2014) to 64% for swift fox on BTPD colonies (August 2015 –
March 2016; Table 8).

11

�DISCUSSION
The 2016 season was our fourth year of research on BTPD sites and the first year of research at
South Park, which contains several small GUPD colonies and large areas where prairie dogs have been
extirpated. In 2013 – 2015, CPW Wildlife Health conducted efficacy trials for the experimental oral
plague vaccine for prairie dogs. Although the vaccine was still considered experimental in 2016, its use
was at a broader scale as a management tool to combat plague. We have collected one year of pretreatment data and three years of post-treatment data at our BTPD site, which has experienced a major
plague event beginning in 2013. It will likely take additional years of monitoring to detect potential
changes in the avian community caused by plague management, as treated colonies no longer experience
extinction events. Therefore, initial data analyses will focus on shorter-term objectives, including
evaluating the importance of plague on BTPD colonies and differences between on and off-colony areas
at GUPD sites.
Since fall 2013, plague epizootics have occurred across ~80% of the BTPD study area. All of
these areas had small numbers of prairie dogs with increasing abundance within 1 - 2 years of the
outbreak, but populations were severely reduced compared to pre-plague levels. Plague outbreaks have
occurred across all treated BTPD sites, but plague was likely present in the system prior to vaccination,
and immunity takes months to develop after vaccination (D. Tripp, pers. comm.). Prairie dog researchers
are interested in whether prairie dogs persist in treated areas during outbreaks, recover more quickly in
treated areas, and have higher survival during enzootic periods (without obvious outbreaks). At least three
bird species (Brewer’s blackbird, horned lark, and vesper sparrow) appeared to have higher detection
rates on active prairie dog colonies, while three species (European starling, grasshopper sparrow, and lark
bunting) appeared to have higher detection rates on colonies with extinct or severely reduced prairie dog
populations following plague outbreaks. Higher numbers of grasshopper sparrows and lark buntings
coincided with high May – June precipitation, which likely contributed to high flea numbers and
conditions favorable to a plague epizootic. Conditions across much of the BTPD study area in 2014 –
2015 began to support grassland birds that favor taller herbaceous vegetation over those that favor shorter
vegetation, such as horned larks and McCown’s longspurs. Further analyses of species density and nest
survival that include other covariates, such as weather and predator occupancy, will elucidate these
relationships.
Precipitation has varied greatly during this study (Fig. 2), particularly on BTPD sites, from
slightly dry to very wet, compared to the 30-year average. In summer 2014 and 2015, normally dry playas
and streambeds were full, grasses were tall and formed seedheads in June, and a different suite of species
was observed, including a large flush of growth in species normally absent or a minor component of the
prairie such as six weeks fescue. In response, we saw a huge influx of lark buntings to BTPD sites; they
were the most common species detected in point counts and nest searches in 2014, and nest numbers
continued to be high in 2015. In contrast, McCown’s longspur numbers declined in 2014, then rebounded
in 2015, while the number of burrowing owl nests doubled each year. These changes may also be related
to concurrent declines in prairie dogs associated with plague epizootics, which accelerate during El Niño
events when cooler, wetter springs and summers result in high numbers of fleas, a major vector of plague.
Vegetation was no longer being clipped, and extinct areas had much more lush vegetation than usual.
Burrowing owl nest numbers increased only in areas that experienced plague epizootics and had
persisting (or recovering) prairie dog populations. This may have created conditions with high prey and
burrow availability in a landscape that continues to contain many active (if small) prairie dog colonies.
Burrowing owls also increased in response to plague events (and prairie dog recolonization) in a previous
study in northern Colorado (Conrey 2010).
In September and October 2014, 42 black-footed ferrets were released in three BTPD study
colonies, one of which was only 0.5 km from the nearest baited site, which experienced a plague epizootic

12

�in fall 2013. Twenty-six additional ferrets were released in 2015 − 2016, and surveys documented a
lactating female and a kit. The two release sites (not included in the prairie dog vaccine study) in
Soapstone Prairie Natural Area were both dusted and baited with vaccine, and the release site near the
Ferret Center was a dusted treatment within the vaccine study through 2015 and was both dusted and
vaccinated in 2016. Released ferrets have been vaccinated against plague and distemper, and were
expected to disperse into adjacent colonies; however, most of the nearby colonies have experienced
plague outbreaks. We began documenting ferrets in our remote camera photos in October 2015, but thus
far, no ferrets have been seen or photographed outside of the colonies where they were released. At this
point, young ferrets must be captured to be vaccinated, as they are not expected to consume vaccine baits
designed for prairie dogs, but work on an oral vaccine for ferrets is in progress. Ferrets will likely predate
on adult birds and nests, but as 90% of their prey base is typically comprised of prairie dogs (Clark 1986),
the overall effect on avian species should be minimal.
This was the fourth year of data collection on this project, and it will likely take additional years
of monitoring to detect potential changes in the avian community caused by different types of plague
management, as treated colonies no longer experience extinction events. Regardless of the efficacy of
plague vaccine versus insecticide in reducing plague impacts, the vaccine will continue to be an important
tool due to cost/benefit of its use and increasing evidence that fleas are evolving resistance to
deltamethrin. Preliminary data suggest that bird densities do vary according to the status of prairie dogs
on a colony, with differences between active colonies and those with extirpated or severely reduced
prairie dog populations following plague outbreaks. Vegetation surveys have also identified differences
between on- and off-colony areas. Raptor and camera data collection will continue through winter
2016/2017. During the 2017 breeding season, we hope to continue collecting point count, raptor count,
and vegetation data on BTPD colonies with different activity levels, following the extensive 2013−2015
plague outbreak. Beyond that, there are several possibilities for continued research. The GUPD
reintroduction planned for South Park is on hold until new funding is obtained; our avian work on GUPD
sites may similarly go on hiatus. We may work more in ferret reintroduction sites, on private lands, or in a
new location with little or no plague management (such as Pawnee National Grassland) for comparison
with our current BTPD site north of Fort Collins. The first publications planned from this research include
an analysis of point count data at our BTPD site from 2006 – present (with collaborators from BCR),
including two complete plague cycles, and a comparison of on- and off-colony GUPD sites regarding
their avian and vegetation communities. Future publications will compare passerine nest survival, raptor
use, and mammalian carnivore occupancy on active colonies versus those with extirpated or severely
reduced prairie dog populations following plague outbreaks.
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13

�Colorado Division of Wildlife. 2003. Conservation plan for grassland species in Colorado. Colorado
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14

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Collins Science Center, Fort Collins, Colorado. 2 pg.

15

�FIGURE LEGENDS
Figure 1. Photos from BTPD and GUPD sites during 2013 – 2016. a) GUPD consuming experimental
bait. b) Ferruginous hawk seen during a winter raptor count. c) Visual obstruction measurement. d)
Burrowing owl on BTPD site. e) Coyote and badger photographed by remote camera.
Figure 2. Monthly precipitation at BTPD (Larimer and Weld Co.) sites from 2013 – 2016, including the
30-year average. Data were taken from the nearest weather station.

16

�TABLES

Point counts
Bird species
Vegetation transects
Vegetation species
Raptor count locations
Raptor count minutes
Nests
Remote camera locations
Remote camera photos

BTPD on

GUPD on

GUPD off

301
59
66
53
9
3,440
64
24
312,272

32
38
7
18
5
1,710
0
7
8,716

119
53
12
22
6
570
0
7
18,018

TOTAL
TOTAL
2016
2013−16
452
1,734
81
137
85
404
75
230
20
86
5,720
26,480
64
607
38
58
339,006 10,842,301

Table 1. Sample sizes for BTPD and GUPD sites, on and off prairie dog colonies. We did one point
count, 5 winter raptor counts, and 5 – 9 summer raptor counts per location. We surveyed 1 – 2 vegetation
transects per plot each year. Photos from 2016 were taken in April – August. GUPD cameras were
deployed during summer, and BTPD cameras were deployed year-round.

SPECIES
Brewer's Blackbird
Horned Lark
Vesper Sparrow
Barn Swallow
Brewer's Sparrow
Common Raven
McCown's Longspur
Red-Winged Blackbird
Western Meadowlark
European Starling
Grasshopper Sparrow
Lark Bunting

Use Rate
A
R+E
0.069
0.249
3.899
4.642
0.135
0.324
0.122
0.122
0.101
0.089
0.120
0.114
1.379
1.544
0.395
0.330
2.566
2.812
0.070
0.123
0.173
0.290
2.231
2.797

TOTAL
COUNT
257
6764
369
192
150
185
2301
574
4235
151
361
3948

Table 2. Bird use rates for the most common species detected during avian point counts on BTPD
colonies (Larimer and Weld Co.) with varying prairie dog activity status: Active (A), Reduced (R) after a
plague event, and Extinct (E). Use rate was calculated by dividing the number of detections by the total
number of points surveyed. The first three species were more common on active colonies, those in the
middle showed no preference, and the last three species were more common on reduced or extinct
colonies. Data reported here do not yet account for probability of detection or the location of individual
birds inside or outside of treatment area boundaries.

17

�% Cover
Grass
Litter
Bare
Forb
Rock
Cactus
Scat
Shrub
Other
Exotic

BTPD
on
71.0
11.9
7.5
4.8
1.7
1.1
1.1
0.6
0.4
0.4

GUPD
on
44.4
10.7
27.2
9.9
3.5
0.0
0.6
0.2
3.5
0.3

GUPD
off
41.2
4.7
16.5
23.5
2.6
0.0
0.9
0.6
9.9
0.0

Table 3. Ground cover percentages from vegetation transects conducted on BTPD (Larimer and Weld
Co.) and GUPD (Park Co.) sites, on and off prairie dog colonies, from June – August 2016.

% Cover
Grass
Litter
Bare
Forb

2013
36.7
27.2
22.8
3.9

2014
55.9
8.7
19.4
8.3

2015
55.7
14.3
13.3
9

2016
71.0
11.9
7.5
4.8

Table 4. Ground cover percentages for dominant vegetation types from 2013 – 2016 for BTPD sites
(Larimer and Weld Co.) in north central Colorado.

Type
Grass
Forb
Shrub
Cactus
Other
Exotic

BTPD on
six weeks fescue
woolly plantain
rubber rabbitbrush
plains pricklypear
lichen
field pennycress

GUPD on
blue grama
fringed sagebrush
winterfat
N/A
lichen
field pennycress

GUPD off
plains bluegrass
fringed sagebrush
rabbitbrush sp.
N/A
lichen
N/A

Table 5. Dominant plant species detected on vegetation transects at BTPD (Larimer and Weld Co.) and
GUPD (Park Co.) sites, on and off prairie dog colonies in June – August 2016.

18

�Species
American Kestrel
Burrowing Owl
Common Raven
Ferruginous Hawk
Golden Eagle
Loggerhead Shrike
Northern Goshawk
Northern Harrier
Prairie Falcon
Rough-legged Hawk
Red-tailed Hawk
Sharp-shinned Hawk
Swainson’s Hawk
Turkey Vulture
TOTAL min

BTPD in
2.26
23.02
3.23
2.21
1.09
0.00
0.00
0.46
0.52
0.24
1.34
0.00
4.80
6.07
11840

GUPD in GUPD out
2.30
1.47
0.45
0.00
17.50
16.70
0.03
0.00
1.79
2.08
0.78
0.21
0.00
0.38
0.48
0.00
0.33
0.04
0.09
0.00
5.46
3.04
0.19
0.21
0.45
0.52
2.66
1.85
6690
7950

TOTAL min
539
2756
2881
264
414
69
30
86
86
35
766
30
639
1044
26480

Table 6. Raptor use of vaccine project areas at BTPD and GUPD sites, on and off prairie dog colonies in
2013 – 2016. Use was quantified as time spent in project areas, and use rate = 100*(use minutes/total
minutes) in BTPD, in GUPD, and off GUPD colonies. Data include breeding counts (late April – August)
at all sites and wintering counts (November – early March) at BTPD sites. Species with small sample
sizes are not shown: American crow, bald eagle, Cooper’s hawk, and osprey (2 min each).

Species
American Kestrel
Burrowing Owl
Common Raven
Ferruginous Hawk
Great Horned Owl
Swainson's Hawk

2013 Fate (n)
(0)
0.71 (7)
(0)
0.00 (1)
(0)
1.00 (2)

2014 Fate (n)
(0)
0.73 (13)
1.00 (1)
0.00 (1)
(0)
0.00 (1)

2015 Fate (n)
0.67 (3)
0.88 (25)
1.00 (1)
1.00 (1)
(0)
1.00 (3)

2016 Fate (n)
1.00 (5)
0.76 (54)
1.00 (1)
1.00 (1)
0.00 (1)
0.50 (2)

TOTAL
0.88 (8)
0.78 (99)
1.00 (3)
0.50 (4)
0.00 (1)
0.75 (8)

Table 7. Nest fate (n = sample size) for raptors in vaccine project areas on BTPD colonies (Larimer and
Weld Co.) during 2013 – 2016. These are naïve apparent nest survival estimates.

19

�Coyote
BTPD GUPD
2013: April - July
2013: August - March
2014: April - July
2014: August - March
2015: April - July
2015: August - March
2016: April - July
2016: August

0.42

0.44

0.46
0.36
0.51
0.38
0.54
0.61
0.52

0.48
0.27
0.47
0.26

0.38
0.31
0.33

Badger
Swift Fox
BTPD GUPD BTPD GUPD
0
0
0.13
0
0.10
0.11
0.07
0
0.03
0.05
0.14
0
0.18
0.03
0.47
0
0.13
0.06
0.29
0
0.11
0.02
0.64
0
0.14
0.28
0.51
0
0.26
0.05
0.63
0

Table 8. Naïve (minimum) occupancy estimates (do not account for probability of detection) for
carnivores based on remote camera photos taken on BTPD and GUPD colonies in 2013 – 2016. BTPD
cameras were deployed year-round, while GUPD cameras were deployed during summer only, so GUPD
colony estimates apply only to May – July and August – early September. GUPD cameras were deployed
in Gunnison Basin and Woodland Park in 2013−2015 and in South Park in 2016. Seven cameras deployed
in 2016 in areas where GUPD prairie dogs have been extirpated yielded estimates of 0.26 (April – July)
and 0.19 (August) for coyotes, with no badgers or swift fox. Occupancy was calculated per site over 2week intervals.

20

�FIGURES
a

b

c

Sean Streich

Sean Streich

e

d

Walter Wehtje

Figure 1. Photos from BTPD and GUPD sites during 2013 – 2016. a) GUPD consuming experimental bait. b) Ferruginous hawk seen during a
winter raptor count. c) Visual obstruction measurement. d) Burrowing owl on BTPD site. e) Coyote and badger photographed by remote camera.

21

�BTPD Precipitation
200
180
160

Precipitation (mm)

140
120

2013
2014

100

2015
2016

80

average

60
40
20
0
April

May

June

July

Figure 2. Monthly precipitation at BTPD (Larimer and Weld Co.) sites from 2013 – 2016, including the
30-year average. Data were taken from the nearest weather station.

22

�APPENDIX 1: BIRD SPECIES LIST

CODE
AMAV
AMCO
AMCR
AMGO
AMGP
AMKE
AMRO
AMWI
AWPE
BAEA
BAIS
BANS
BARS
BBMA
BCCH
BGGN
BHCO
BHGR
BRBL
BRSP
BTLH
BTPI
BUOW
BWTE
CAFI
CAGU

SPECIES
American Avocet
American Coot
American Crow
American Goldfinch
American Golden-plover
American Kestrel
American Robin
American Wigeon
American White Pelican
Bald Eagle
Baird's Sparrow
Bank Swallow
Barn Swallow
Black-billed Magpie
Black-capped Chickadee
Blue-gray Gnatcatcher
Brown-headed Cowbird
Black-headed Grosbeak
Brewer's Blackbird
Brewer's Sparrow
Broad-tailed Hummingbird
Band-tailed Pigeon
Burrowing Owl
Blue-winged Teal
Cassin's Finch
California Gull

BTPD
BTPD
In
x

x
x
x
x
x
x
x
x
x
x
x

Gunn
In

Gunn
Out

x
x
x

South
In

South
Out
x

x
x

x
x

x
x

x
x

x

x
x

x

x
x
x
x

x
x
x
x

x
x
x
x
x
x
x

GUPD
Wood
Wood
In
Out

x
x
x
x

x
x
x

x
x
x
x

x

x
x
x

x

x

x

x
x
x

x
x

x

x

x
x
x

x

x
x

x
x

23

�CANG
CASP
CCLO
CCSP
CHSP
CLNU
CLSW
COFL
COGR
COHA
CONI
CORA
DCCO
DEJU
DOWO
DUFL
EABL
EAKI
EAME
ECDO
EUST
EVGR
FEHA
GADW
GBHE
GOEA
GRAJ
GRSP
GTGR
GTTO
GUSG

Canada Goose
Cassin's Sparrow
Chestnut-collared Longspur
Clay-colored Sparrow
Chipping Sparrow
Clark's Nutcracker
Cliff Swallow
Cordilleran Flycatcher
Common Grackle
Cooper's Hawk
Common Nighthawk
Common Raven
Double-crested Cormorant
Dark-eyed Junco
Downy Woodpecker
Dusky Flycatcher
Eastern Bluebird
Eastern Kingbird
Eastern Meadowlark
Eurasian Collared-Dove
European Starling
Evening Grosbeak
Ferruginous Hawk
Gadwall
Great Blue Heron
Golden Eagle
Gray Jay
Grasshopper Sparrow
Great-tailed Grackle
Green-tailed Towhee
Gunnison Sage-grouse

x
x
x
x
x

x

x
x

x

x
x
x
x

x
x
x
x

x

x
x
x
x

x
x

x
x

x

x
x

x

x
x

x

x

x
x
x

x

x

x

x

x

x
x
x

x

x
x
x
x

x
x
x
x
x
x

x

x
x

x
x

x
x

x

x
x
x

x
x
x

x
x

x
x

x
x

x
x

x
x
x

x
x

24

x

x

�GWTE
HAWO
HETH
HOLA
HOME
HOSP
HOWR
KILL
LARB
LASP
LBCU
LEGO
LISP
LOSH
MALL
MCLO
MGWA
MOBL
MOCH
MODO
MOPL
NOFL
NOGO
NOHA
NOMO
NRWS
NSHO
OSFL
OSPR
PIGR
PISI

Green-winged Teal
Hairy Woodpecker
Hermit Thrush
Horned Lark
Hooded Merganser
House Sparrow
House Wren
Killdeer
Lark Bunting
Lark Sparrow
Long-billed Curlew
Lesser Goldfinch
Lincoln's Sparrow
Loggerhead Shrike
Mallard
McCown's Longspur
MacGillivray's Warbler
Mountain Bluebird
Mountain Chickadee
Mourning Dove
Mountain Plover
Northern Flicker
Northern Goshawk
Northern Harrier
Northern Mockingbird
Northern Rough-winged Swallow
Northern Shoveler
Olive-sided Flycatcher
Osprey
Pine Grosbeak
Pine Siskin

x

x
x
x
x
x
x
x
x

x
x
x

x
x

x
x

x

x
x

x
x

x
x

x

x
x
x
x

x
x
x

x

x

x
x

x
x

x
x

x

x
x
x

x
x
x
x

x

x

x
x
x
x
x

x
x
x
x
x

x

x
x
x
x

x
x
x
x

x
x
x
x
x

x
x
x

x

x
x
x
x
x
x
x

x
x
x
x
x

x

25

x

x

�PRFA
PYNU
RBGU
RBNU
RCKI
RECR
RNDU
RNEP
RNSA
ROOS
ROPI
ROWR
RTHA
RWBL
SACR
SAGS
SAPH
SATH
SAVS
SNBU
SOSP
SPSA
SPTO
SSHA
STJA
SWHA
TOSO
TRES
TUVU
VESP
VGSW

Prairie Falcon
Pygmy Nuthatch
Ring-billed Gull
Red-breasted Nuthatch
Ruby-crowned Kinglet
Red Crossbill
Ring-necked Duck
Ring-necked Pheasant
Red-naped Sapsucker
Rooster
Rock Pigeon
Rock Wren
Red-tailed Hawk
Red-winged Blackbird
Sandhill Crane
Sage Sparrow
Say's Phoebe
Sage Thrasher
Savannah Sparrow
Snow Bunting
Song Sparrow
Spotted Sandpiper
Spotted Towhee
Sharp-shinned Hawk
Stellar's Jay
Swainson's Hawk
Townsend's Solitaire
Tree Swallow
Turkey Vulture
Vesper Sparrow
Violet-green Swallow

x

x

x

x
x

x

x
x

x
x

x
x

x
x
x
x

x

x
x

x
x
x
x
x
x
x
x
x
x
x
x
x
x

x

x

x
x
x

x
x
x

x

x
x
x

x
x

x

x
x
x

x
x
x

x

x
x

x
x

x

x
x

x
x
x
x
x
x
x

x
x
x
x
x
x
x

x
x
x
x
x
x
x

26

x

x

x

x

x
x

x
x
x

x
x
x

x

x
x

�WAVI
WBNU
WCSP
WEBL
WEGR
WEKI
WEME
WESJ
WETA
WEWP
WHIM
WIPH
WISA
WISN
WITU
YEWA
YHBL
YRWA
TOTAL

Warbling Vireo
White-breasted Nuthatch
White-crowned Sparrow
Western Bluebird
Western Grebe
Western Kingbird
Western Meadowlark
Western Scrub-Jay
Western Tanager
Western Wood-pewee
Whimbrel
Wilson's Phalarope
Williamson's Sapsucker
Wilson's Snipe
Wild Turkey
Yellow Warbler
Yellow-headed Blackbird
Yellow-rumped Warbler
137 species

x
x

x

x
x

x
x

x
x
x

x
x

x
x

x

x
x

x
x
x
x

x
x
89

x

x

x

x
x

x
x

x
x

x

x
x

x
x
x

x
x

x
x
x
x

x

x

x

x

x
x
x
x

x
68

x
68

x
54

x

x
50

33

46

Table A1. Bird species list for BTPD and GUPD sites on and off prairie dog colonies in Colorado during summer 2013−2016. These species were
detected during avian point counts conducted during the breeding season. Gunn and Wood sites were sampled 2013−2015, while South was
sampled only in 2016.

27

�APPENDIX 2: PLANT SPECIES LIST

Code

Family

Scientific Name

Common Name

Exotic

BTPD
BTPD
In

Gunn
In

Gunn
Out

x

x

x

x

x

x

x

GUPD
Wood
Wood
In
Out

South
In

South
Out

x

x

x

x

x

x

Grasses, Sedges, and Rushes
ACHY

Poaceae

Achnatherum hymenoides

Indian Ricegrass

ACLE

Poaceae

Achnatherum lettermanii

Letterman’s Needlegrass

AGCR

Poaceae

Agropyron cristatum

Crested Wheatgrass

x

x

AGST

Poaceae

Agrostis stolonifera

Creeping Bentgrass

x

x

ARPU

Poaceae

Aristida purpurea

Purple Threeawn

x

x

BODA

Poaceae

Bouteloua dactyloides

Buffalograss

x

x

x

x

BOGR

Poaceae

Bouteloua gracilis

Blue Grama

x

x

x

x

x

BRCI

Poaceae

Bromus ciliatus

Fringed Brome

x

x

x

BRHO

Poaceae

Bromus hordeaceus

Soft Brome

x

BRIN

Poaceae

Bromus inermis

Smooth Brome

x

BRPO

Poaceae

Bromus porteri

Porter Brome

BRTE

Poaceae

Bromus tectorum

Cheatgrass

CAIN

Cyperaceae

Carex inops ssp. heliophila

Sun Sedge

CALO

Poaceae

Calamovilfa longifolia

Prairie Sandreed

CARE

Cyperaceae

Carex Spp.

Sedge Spp. (Unident.)

x

ELEL

Poaceae

Elymus elymoides

Squirreltail

x

ELGL

Poaceae

Elymus glaucus

Blue Wildrye

ELRE

Poaceae

Elymus repens

Quackgrass

ELTR

Poaceae

Elymus trachycaulus

Slender Wheatgrass

FEAR

Poaceae

Festuca arizonica

Arizona Fescue

FEID

Poaceae

Festuca idahoensis

Idaho Fescue

FEST

Poaceae

Festuca Spp.

Unknown Fescue

x

x

HECO

Poaceae

Hesperostipa comata

Needle &amp; Thread Grass

x

x

x

HOJU

Poaceae

Hordeum jubatum

Foxtail Barley

x

x

x

JUBA

Juncaceae

Juncus balticus

Baltic Rush

x

x

x

KOMA

Poaceae

Koeleria macrantha

Junegrass

x

x

x

x

x

x
x
x

x

x

x

x

x
x

x

x
x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x

x

x
x

28

x
x

x
x

x
x

x

�LOPE

Poaceae

Lolium perenne

Annual Ryegrass

MUFI

Poaceae

Muhlenbergia filiformis

Pullup Muhly

x

x

MUHL

Poaceae

Muhlenbergia Spp.

Muhlenbergia Spp.

MUMO

Poaceae

Muhlenbergia montana

Mountain Muhly

MUTO

Poaceae

Muhlenbergia torreyi

Ring Muhly

NAVI

Poaceae

Nassella viridula

Green Needlegrass

PASM

Poaceae

Pascopyrum smithii

Western Wheatgrass

PHPR

Poaceae

Phleum pratense

Timothy Grass

PIMI

Poaceae

Piptatherum micranthum

Littleseed Ricegrass

POAR

Poaceae

Poa arida

Plains Bluegrass

POFE

Poaceae

Poa fendleriana

Muttongrass

POLE

Poaceae

Poa leptocoma

Blue Marshgrass

POPR

Poaceae

Poa pratensis

Kentucky Bluegrass

x

x

RUSH

Juncaceae

Juncus Spp.

Rush Spp.

x

x

SCPA

Poaceae

Schedonnardus paniculatus

Tumblegrass

x

SCPR

Poaceae

Schedonorus pratensis

Meadow Fescue

SCSC

Poaceae

Schizachyrium scoparium

Little Bluestem

SOBI

Poaceae

Sorghum bicolor

Sorghum

SPCR

Poaceae

Sporobolus cryptandrus

Sand Dropseed

x

VUOC

Poaceae

Vulpia octoflora

Six Weeks Fescue

x

ACMI

Asteraceae

Achillea millefolium

Common Yarrow

ACRE

Asteraceae

Acroptilon repens

Russian Knapweed

ALCE

Liliaceae

Allium cernuum

Nodding Onion

AMBL

Amaranthaceae

Amaranthus blitoides

Prostrate Pigweed

AMBR

Asteraceae

Ambrosia Sp.

Ambrosia sp.

ANAR

Apiaceae

Angelica arguta

White Angelica

ANMI

Asteraceae

Antennaria microphylla

Littleleaf Pussytoes

ANMU

Ranunculaceae

Anemone multifida

Cutleaf Anemone

x

ANOC

Primulaceae

Androsace occidentalis

Western Rockjasmine

x

ANPA

Asteraceae

Antennaria parvifolia

Small-leaf Pussytoes

x

x
x

x

x

x

x

x

x

x

x

x

x

x
x
x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

x

x

x
x

x

x
x

x

x

x

x
x

Forbs
x
x

x

x

x

x
x

x

x
x

29

x

x
x

x

x

x

x

x

x

x

�ANSE

Primulaceae

Androsace septentrionalis

Pygmy-flower Rockjasmine

ARAB

Asteraceae

Artemisia absinthium

Absinth Wormwood

ARAN

Rosaceae

Argentina anserina

Silver Weed

ARCA

Asteraceae

Artemisia campestris

Field Sagewort

ARCO

Caryophyllaceae

Arenaria congesta

Ballhead Sandwort

ARFE

Caryophyllaceae

Arenaria fendleri

Fendler's Sandwort

x

ARFR

Asteraceae

Artemisia frigida

Fringed Sagebrush

x

ARLU

Asteraceae

Artesmia ludoviciana

Prairie Sage

ARPO

Papavaraceae

Argemone polyanthemos

Crested Pricklypoppy

ARUV

Ericaceae

Arctostaphylos uva-ursi

Bearberry (Kinnikinnick)

ASBI

Fabaceae

Astragalus bisulcatus

Two-grooved Milkvetch

x

x

x

ASDR

Fabaceae

Astragalus drummondii

Drummond's Milkvetch

x

x

x

ASMI

Fabaceae

Astragalus miser

Timber Milkvetch

x

ASPA

Fabaceae

Astragalus parryii

Parry's Milkvetch

x

ASSH

Fabaceae

Astralagus shortianus

Short's Milkvetch

BASC

Chenopodiaceae

Bassia scoparia

Kochia/ Mexican Fireweed

BEPL

Scrophulariaceae

Besseya plantaginea

White River Coral Drops

CALI

Scrophulariaceae

Castilleja linariifolia

Narrowleaf Paintbrush

x

x

CAMI

Scrophulariaceae

Castilleja miniata

Scarlet Paintbrush

x

x

CHBE

Chenopodiaceae

Chenopodium berlandieri

Netseed Lambsquarter

x

x

CHEN

Chenopodiaceae

Chenopodium Spp.

Goosefoot Spp. (Unident.)

x

x

CHGL

Euphorbiaceae

Chamaesyce glyptosperma

Small Ribseed Sandmat

x

x

CHHI

Chenopodiaceae

Chenopodium hians

Hians Goosefoot

CHLE

Chenopodiaceae

Chenopodium leptophyllum

Narrowleaf Goosefoot

CHSE

Euphorbiaceae

Chamaesyce serpyllifolia

Thyme-leaf spurge

x

CHWA

Chenopodiaceae

Chenopodium watsonii

Watson's Goosefoot

x

CIAR

Asteraceae

Cirsium arvense

Canada Thistle

CICA

Asteraceae

Cirsium canescens

Prairie/Creamy Thistle

CIUN

Asteraceae

Cirsium undulatum

Wavyleaf Thistle

COAR

Convolvulaceae

Convolvulus arvensis

Field Bindweed

CRTH

Boraginaceae

Cryptantha thyrsiflora

Calcareous Cryptantha

x

x

x

x

x

x

x

x

x

x

x
x
x
x

x

x

x

x
x

x

x
x
x

x

x
x

x

x
x

x

x

x
x

x
x

x

30

x

x
x

x
x
x

x
x

x

�DESO

Brassicaceae

Descurainia sophia

Pinnate Tansy Mustard

DRAB

Brassicaceae

Draba sp.

Unknown Mustard (Draba)

x

x

EQAR

Equisetaceae

Equisetum arvense

Field Horsetail

ERAS

Brassicaceae

Erysimum asperum

Western Wallflower

ERCA

Asteraceae

Erigeron canus

Hoary Fleabane

x

ERCE

Polygonaceae

Eriogonum cernuum

Nodding Buckwheat

x

ERCO

Asteraceae

Erigeron compositus

Cutleaf Daisy

ERFL

Asteraceae

Erigeron flagellaris

Trailing Fleabane

ERLO

Polygonaceae

Eriogonum lonchophyllum

Spearleaf Buckwheat

x

EROV

Polygonaceae

Eriogonum ovalifolium

Cushion Buckwheat

x

ERRA

Polygonaceae

Eriogonum racemosum

Redroot Buckwheat

x

x

ERSP

Asteraceae

Erigeron speciosus

Showy Fleabane

x

x

ERST

Asteraceae

Erigeron strigosus

Prairie Fleabane

x

x

ERUMA

Polygonaceae

Eriogonum umbellatum v. aureum

Sulphur Buckwheat

x

x

x

ERUMM

Polygonaceae

Eriogonum umbellatum v. majus

Creamy Buckwheat

x

x

x

FRVE

Rosaceae

Fragaria vesca

Woodland Strawberry

x

x

FRSP

Gentianaceae

Frasera speciosa

Monument Plant

x

GABO

Rubiaceae

Galium boreale

Bedstraw

x

GECA

Geraniaceae

Geranium caespitosum

Pineywoods Geranium

GETR

Rosaceae

Geum triflorum

Old Man's Whiskers

GEVI

Geraniaceae

Geranium viscosissimum

Sticky Purple Geranium

GRSQ

Asteraceae

Grindelia squarrosa

Curlycup Gumweed

x

x

GUSA

Asteraceae

Gutierrezia sarothrae

Broom Snakeweed

x

x

x

HAFL

Boraginaceae

Hackelia floribunda

Many-Flowered Stickseed

x

x

HEPA

Saxifragaceae

Heuchera parvifolia

Littleleaf Alumroot

x

x

HEUC

Saxifragaceae

Heuchera Spp.

Alumroot Spp. (Unident.)

HEVI

Asteraceae

Heterotheca villosa

Hairy False Golden Aster

HYFI

Asteraceae

Hymenopappus filifolius

Fineleaf Hymenopappus

HYRI

Asteraceae

Hymenoxys richardsonii

Pingue Rubberweed

IRMI

Iridaceae

Iris missouriensis

Rocky Mountain Iris

IVAX

Asteraceae

Iva axillaris

Povertyweed

x

x

x

x

x
x

x

x
x
x
x

x

x
x
x

x

x

x

x

x

x

x
x
x
x

x

x

x
x

x

x

x
x
x
x

31

x

�LALA

Fabaceae

Lathyrus latifolius

Perennial Pea

LAOC

Boraginaceae

Lappula occidentalis

Flatspine Stickseed

x

x
x

LASC

Asteraceae

Laennecia schiedeana

Pineland Horseweed

x

LEDE

Brassicaceae

Lepidium densiflorum

Common Pepperweed

LERA

Brassicaceae

Lepidium ramosissimum

Many-branched Pepperweed

LEVI

Brassicaceae

Lepidium virginicum

Virginia Pepperweed

LEVU

Asteraceae

Leucanthemum vulgare

Ox Eye Daisy

LILE

Linaceae

Linum lewisii

Blue Flax

LIPU

Asteraceae

Liatris punctata

Gayfeather/ Blazing Star

x

x

LUAR

Fabaceae

Lupinus argenteus

Silvery Lupine

x

x

LUWY

Fabaceae

Lupinus wyethii

Wyeth's Lupine

x

x

LYJU

Asteraceae

Lygodesmia juncea

Skeletonweed

x

MAPI

Asteraceae

Machaeranthera pinnatifida

Lacy Tansyaster

x

MARA

Liliaceae

Maianthemum racemosum

Feathery False Lily of Valley

MARE

Berberidaceae

Mahonia repens

Oregon Grape

MATA

Asteraceae

Machaeranthera tanacetifolia

Tanseyleaf Tansyaster

x

MAVE

Marsileaceae

Marsilea vestita

Hairy Waterclover

x

MEAR

Lamiaceae

Mentha arvensis

Wild Mint

MEHU

Boraginaceae

Mertensia humilis

Mountain Bluebells

MELA

Boraginaceae

Mertensia lanceolata

Prairie Bluebells

MEOF

Fabaceae

Melilotus officinalis

Yellow Sweetclover

x

x

MESA

Fabaceae

Medicago sativa

Alfalfa

x

x

MILI

Nyctaginaceae

Mirabilis linearis

Narrowleaf Four o'clock

OECA

Onagraceae

Oenothera caespitosa

Tufted Evening Primrose

OECO

Onagraceae

Oenothera coronopifolia

Crownleaf Evening Primrose

x

OESU

Onagraceae

Oenothera suffrutescens

Scarlet Beeblossom

x

ORLU

Orobanchaceae

Orobanche ludoviciana

Louisiana Broomrape

ORLU2

Scrophulariaceae

Orthocarpus luteus

Yellow Owl's Clover

OXLA

Fabaceae

Oxytropis lambertii

Lambert Crazyweed

OXSE

Fabaceae

Oxytropis sericea

White Locoweed

PEBA

Scrophulariaceae

Penstemon barbatus

Beardlip Beardtongue

x

x

x

x

x

x

x

x

x

x
x

x

x
x

x

x
x
x

x

x

x

32

x
x

x

x

x

x

x

x
x
x
x

x

x

x

x

x
x

x

x

x
x

x

�PECR

Scrophulariaceae

Penstemon crandallii

Crandall's Beardtongue

PHBE

Brassicaceae

Physaria bellii

Front Range Twinpod

x

PHHO

Polemoniaceae

Phlox hoodii

Spiny Phlox

x

PHLO

Polemoniaceae

Phlox longifolia

Longleaf Phlox

PIOP

Asteraceae

Picradeniopsis oppositifolia

Opposite Leaf Bahia

PLMA

Plantaginaceae

Plantago major

Common Plantain

PLPA

Plantaginaceae

Plantago patagonica

Woolly Plantain

POGR

Rosaceae

Potentilla gracilis

Slender Cinquefoil

POHI

Rosaceae

Potentilla hippiana

Woolly Cinquefoil

POOL

Portulacaceae

Portulaca oleracea

Common Purslane/ Hogweed

x

POPE

Polygonaceae

Polygonum persicaria

Spotted Ladysthumb

x

PSLA

Fabaceae

Psoralidium lanceolatum

Lemon Scurfpea

RACO

Asteraceae

Ratibida columnifera

Upright Prairie Coneflower

RHRO

Crassulaceae

Rhodiola rosea

King's Crown

x

SATR

Chenopodiaceae

Salsola tragus

Russian Thistle/Tumbleweed

x

SAXI

Saxifragaceae

Saxifraga Spp.

Saxifrage Spp. (Unident.)

SEDE

Selaginellaceae

Selaginella densa

Lesser Spikemoss

SEIN

Asteraceae

Senecio integerrimus

SELA

Crassulaceae

SENE

x

x

x

x

x

x

x
x

x
x

x
x

x

x

x

x

x

x

x
x
x
x
x
x

x
x

x

Lambstongue Ragwort

x

x

Sedum lanceolatum

Spearleaf Stonecrop

x

x

Asteraceae

Senecio Spp.

Groundsel Spp. (Unident.)

SOMI

Asteraceae

Solidago missouriensis

Missouri Goldenrod

SONU

Fabaceae

Sophora nuttalliana

Silky Sophora

x

SOTR

Solanaceae

Solanum triflorum

Cutleaf Nightshade

x

x

SPCO

Malvaceae

Sphaeralcea coccinea

Scarlet Globemallow

x

x

SPFA

Euphorbiaceae

Spurge (Unident.)

x

SYLA

Asteraceae

Symphyotrichum lanceolatum

White Panicle Aster

TAOF

Asteraceae

Taraxacum officinale

Dandelion

TAVU

Asteraceae

Tanacetum vulgare

Common Tansy

THAR

Brassicaceae

Thlaspi arvense

Field Pennycress

THRH

Fabaceae

Thermopsis rhombifolia

Golden Pea

TRDU

Asteraceae

Tragopogon dubius

Yellow Salsify

x
x

x
x

x

x

x

x

x

x

x

x

x
x

x

x

x
x

x

33

x

x

x

�TRHY

Fabaceae

Trifolium hybridum

Alsike Clover

x

TRPR

Fabaceae

Trifolium pratense

Red Clover

x

x

URDI

Urticaceae

Urtica gracilis

Stinging Nettle

x

VIAM

Fabaceae

Vicia americana

American Vetch

x

VICI

Fabaceae

Vicia Spp.

Vetch Spp. (Unident.)

WYAM

Asteraceae

Wyethia amplexicaulis

Mule-ears

ACGL

Aceraceae

Acer glabrum

Mountain Maple

AMAL

Rosaceae

Amelanchier alnifolia

Serviceberry

x

x

ARCA

Asteraceae

Artemisia cana

Silver Sagebrush

x

x

ARTR

Asteraceae

Artemisia tridentata

Big Sagebrush

x

x

x

x

x

ATCA

Chenopodiaceae

Atriplex canescens

Fourwing Saltbush

x

x

CEMO

Rosaceae

Cercocarpus montanus

Mountain Mahogany

x

x

x

x

x

CHVI

Asteraceae

Chrysothamnus viscidiflorus

Douglas Rabbitbrush

x

x

x

x

x

DAFR

Rosaceae

Dasiphora fruticosa

Shrubby Cinquefoil

x

x

x

x

EREF

Polygonaceae

Eriogonum effusum

Spreading Buckwheat

x

ERNA

Asteraceae

Ericameria nauseosa

Rubber /Grey Rabbitbrush

x

HODU

Rosaceae

Holodiscus dumosus

Rockspirea

JUCO

Cupressaceae

Juniperus communis ssp. alpina

Common Juniper

x

x

JUSC

Cupressaceae

Juniperus scopulorum

Rocky Mountain Juniper

x

x

KRLA

Chenopodiaceae

Krascheninnikovia lanata

Winterfat

x

x

PRAM

Rosaceae

Prunus americana

American Plum

x

x

PRVI

Rosaceae

Prunus virginiana

Western Chokecherry

x

x

PUTR

Rosaceae

Purshia tridentata

Bitter Brush

x

x

RASP

Asteraceae

RHTR

Anacardiaceae

Rhus trilobata

Skunkbrush Sumac

x

x

RIAU

Grossulariaceae

Ribes aureum

Golden Currant

x

x

x

RICE

Grossulariaceae

Ribes cereum

Wax Currant

x

ROAR

Rosaceae

Rosa arkansana

Prairie/ Wild Rose

x

ROWO

Rosaceae

Rosa woodsii

Woods' Rose

RUID

Rosaceae

Rubus idaeus

Wild Red Raspberry

x

x

x

x
x
x
x

Shrubs
x

x
x

x

x
x

x
x

x

x
x
x

x

x

Rabbitbrush (Unident.)

34

x
x

x

x

x

x

x

x

x

x

x

x

�SALI

Salicaceae

Salix Spp.

Willow Spp. (Unident.)

SYOC

Caprifoliaceae

Symphoricarpos occidentalis

Western Snowberry

x

TECA

Asteraceae

Tetradymia canescens

Spineless Horsebrush

x

XANT

Asteraceae

Xanthium spp.

Cocklebur sp.

x

YUGL

Agavaceae

Yucca glauca

Great Plains Yucca

x

ABLA

Pinaceae

Abies lasiocarpa

Subalpine Fir

PIEN

Pinaceae

Picea engelmannii

Engelmann Spruce

PIFL

Pinaceae

Pinus flexilis

Limber Pine

PIPO

Pinaceae

Pinus ponderosa

Ponderosa Pine

PIPU

Pinaceae

Picea pungens

Blue Spruce

POAN

Salicaceae

Populus angustifolia

Narrow-leaved Cottonwood

PODE

Salicaceae

Populus deltoides ssp. wislizenii

POTR

Salicaceae

Populus tremuloides

PSME

Pinaceae

x

x

x

x

x

x

x

x

Trees
x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x

x
x

x

x

Rio Grande Cottonwood

x

x

Quaking Aspen

x

x

Pseudotsuga menziesii

Douglas Fir

x

x

Escobaria vivipara

x

Cacti and Other Plants
ESVI

Pincushion Cactus

x

FUNG

Cactaceae

Fungi

x

x

x

LICH

Lichen

x

x

x

x

x

MOSS

Moss

x

x

x

x

x

x

x

74

75

OPFR

Cactaceae

Opuntia fragilis

Brittle Pricklypear

OPPO

Cactaceae

Opuntia polyacantha

Plains Pricklypear

PESI

Cactaceae

Pediocactus simpsonii

Mountain Ball Cactus

Total

x
x

x

21

24

x
x

x
34

230 species

x

96

127

127

Table A2. Plant species list for BTPD and GUPD sites on and off prairie dog colonies in Colorado for 2013−2016. Gunn and Wood sites were
sampled 2013−2015, while South was sampled only in 2016.

35

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              <text>Range-wide declines in prairie dog (&lt;em&gt;Cynomys&lt;/em&gt; sp.) populations have occurred, and the largest limiting factor in recent decades appears to be the high mortality and colony extirpation associated with plague (Antolin et al. 2002), caused by the bacterium &lt;em&gt;Yersinia pestis&lt;/em&gt;. Prairie dog colonies support a diverse community of associated species, many of which are not susceptible to plague but may be indirectly affected.</text>
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              <text>Cost Center 3420 Avian Research. Work Package 1680 Bird conservation</text>
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