563 items found
Database
Multiple observers
Photos
Wildlife cameras
Database
Multiple observers
Photos
Wildlife cameras
Summary
- Contemporary methods for sampling wildlife populations include the use of remotely triggered wildlife cameras (i.e., camera traps). Such methods often result in the collection of hundreds of thousands of photos that must be identified, archived, and transformed into data formats required for statistical analyses.
- Cpw Photo Warehouse is a freely available software based in Microsoft Access® that has been customized for this purpose using Visual Basic® for Applications (VBA) code. Users navigate a series of point-and-click menu items that allow them to input information from camera deployments, automatically import photos (and image data stored within the photos) related to those deployments, and store data within a relational database. Images are seamlessly incorporated into the database windows, but are stored separately from the database.
- The database includes menu options that (i) facilitate identification of species within the images, (ii) allow users to view and filter any subset of the databased on study area, species, season, etc., and (iii) produce input files for common analyses such as occupancy, abundance, density and activity patterns using Programs mark, presence, density and the r packages ‘secr’ and ‘overlap’.
- Our database makes explicit use of multiple observers, which greatly enhances the efficiency and accuracy with which a large number of photos can be identified. Modular subsets of the data can be distributed to an unlimited number of observers on or off site for identification. Modules are then re-incorporated into the database using a custom import function.
Drought strategies
Functional traits
Intraspecific trait variation
Ontogeny
Root traits
Drought strategies
Functional traits
Intraspecific trait variation
Ontogeny
Root traits
Cutthroat Trout Conservation
The most diverse trout species in North America, the historical distribution of cutthroat trout covers the broadest range of any stream dwelling trout in the Western Hemisphere. The rugged topography of their range has lead to isolation, which in turn has given rise to fourteen recognized subspecies. Four of these evolved in Colorado: the Colorado River cutthroat trout in drainages west of the continental divide, Greenback cutthroat trout in the South Platte and Arkansas River drainages, and the Rio Grande cutthroat trout in streams that drain into the San Luis Valley. In addition, the yellowfin cutthroat trout was historically found in Twin Lakes at the headwaters of the Arkansas drainage. Unfortunately, this predator that grew to over 10 lbs, is now extinct. All three remaining species have either been petitioned to be listed or are currently listed under the Endangered Species Act. Dramatic reductions in their range have been precipitated primarily by the introduction of nonnative salmonids. Specifically rainbow trout that hybridize with cutthroat trout, and brook and brown trout that tend to replace them in streams and rivers. In an effort to preserve the legacy of these fish, multi-agency conservation teams have been established for each subspecies.
Contact: kevin.rogers@state.co.us
Cutthroat Trout Recovery and Conservation Team documents:
Colorado River cutthroat trout
Cutthroat Trout Research
Taxonomy
New genetic research led by University of Colorado scientists has produced several fascinating discoveries about Colorado's native cutthroat trout - including the location of the last surviving wild population of the federally protected greenback cutthroat trout.
Researchers analyzed DNA extracted from wild trout and from museum specimens collected from sites around Colorado and New Mexico as far back as 1856, then used that genetic data as a baseline for understanding the current distribution of Colorado's native cutthroat trout.
In addition to identifying the one remaining "true" greenback population, researchers identified two distinct genetic lineages within the range of Colorado River cutthroat trout, one in northwest Colorado and the other centered around the Gunnison River basin. Further research will be needed to understand the relationship between these two lineages.
In all, six lineages of cutthroat appear to have evolved in Colorado, with native ranges that roughly correspond to major drainage basins in the state. The greenback cutthroat trout, Colorado's state fish, was native to the drainages of the South Platte, while the long extinct yellowfin cutthroat trout of Twin Lakes actually appears to have been the native trout of the Arkansas River Basin. Rio Grande cutthroat trout still can be found in streams that drain into the San Luis Valley, while a lineage that used to call the San Juan basin home appears to be extinct as well. More research will be required to resolve whether the remaining two lineages that can be found across Colorado’s western slope are indeed two distinct subspecies – that work is ongoing.
Native ranges of Colorado's six distinct lineages of cutthroat trout follow major drainage basins.
Given that additional lineages of our native cutthroat trout were identified with the DNA testing above, we wanted to determine if these lineages displayed different physical characteristics as well. This is particularly important since it has been argued that genetics should not be the sole factor in determining taxonomic distinctions, and that morphological traits (visual characteristics) are often better suited for discriminating taxa. A recent comprehensive study examined the relationship between the differences implied by the DNA and the morphology of these fish. Indeed, it appears that these new lineages can also be identified by examining morphological traits as well.
Technical Reports
- Bestgen, K. R. et al. 2019. Distinct phenotypes of native Cutthroat Trout emerge under a molecular model of lineage distributions.
- Rogers, K. B. et al. 2014. Using genetic diversity to inform conservation efforts for native cutthroat trout of the southern Rocky Mountains.
- Bestgen, K. R. et al. 2013. Phenotype predicts genotype for lineages of native cutthroat trout in the southern Rocky Mountains.
- Rogers, K. B. 2012. Piecing together the past: using DNA to resolve the heritage of our state fish.
- Rogers, K. B. 2010. Cutthroat trout taxonomy: exploring the heritage of Colorado's state fish.
- Rogers, K. B. et al. 2011. Development of an amplified fragment length polymorphism (AFLP) test to distinguish Colorado River from Rio Grande cutthroat trout.
- Rogers, K. B. 2007. A suggested protocol for collecting cutthroat trout tissues for subsequent genetic analysis.
- UDWR. 2000. Genetic considerations associated with cutthroat trout management: a position paper.
Wild spawn operations
A key element of cutthroat trout conservation involves the ability to take fertilized eggs from wild populations. Progeny from these operations are used for founding new populations in waters that have been cleared of nonnative fish that otherwise replace cutthroat trout or hybridize with them. Where habitats home to pure cutthroat trout have been invaded by nonnative salmonids, it important to replicate those populations before they wink out. Improving methods for obtaining fertilized eggs in the wild will facilitate those efforts.
CPW biologist Lori Martin takes spawn from cutthroat trout in Roan Creek. This population has been invaded by nonnative rainbow trout, and many of its residents are now hybridized. Families are raised separately at CPW's Research Hatchery in Fort Collins while DNA from the parents are tested. Only progeny from pure parents will be used to replicate this population in other waters.
Technical Reports
- Rogers, K. B. 2010. A suggested protocol for extending milt from male salmonids for use in wild spawn operations.
Cutthroat trout in a changing climate
Like many coldwater fish species, cutthroat trout will face numerous additional challenges in a warming climate (see Dan Isaak's climate blog). State and federal researchers teamed up with Dr. Kurt Fausch of Colorado State University to develop a robust approach for synthesizing the myriad factors that will influence the persistence of remaining 121 individual conservation populations of Rio Grande cutthroat trout to 2080. Recently published as a featured paper in the North American Journal of Fisheries Management titled “Predicting persistence of Rio Grande Cutthroat Trout populations in an uncertain future”, the study found that although streams are predicted to warm by 2080, less than 10% of populations will be adversely affected. In contrast, nearly 65% are predicted to be extirpated (or nearly so) by nonnative trout that have already invaded or are expected to soon. Many populations will require the help of managers if they are to persist well into the 21st century. A manual for running the model can be found by clicking the link below
Technical Reports
- Rogers, K. B, M. P. Zeigler, J. J. Roberts, A. S. Todd, and K. D. Fausch. 2019. A guide for estimating population persistence using the Rio Grande Cutthroat Trout Bayesian Network.
- Roberts, J. J., and K. D. Fausch. 2015. Consequences of climate change for mountain lakes and native cutthroat trout.
Securing native cutthroat trout in Trappers Lake, Colorado
Trappers Lake historically was home to Colorado’s premier wild Colorado River cutthroat trout fishery. Unfortunately, a variety of factors have served to suppress the current population as well as marginalize the value of the fishery due to introgression with Yellowstone cutthroat trout. Recent genetic surveys have revealed that the remaining cutthroat trout are a hybrid swarm. Reduced cutthroat trout numbers have been attributed to a burgeoning brook trout population that is now being thinned by fall trapping efforts. In addition, whirling disease invaded the population in the late 1990s, and has now firmly established itself suppressing recruitment of cutthroat trout further. In an effort to control the spread of the disease, anglers are reminded to decontaminate their gear after fishing at Trappers Lake particularly before heading into the higher elevation lakes such as Little Trappers Lake that remain free of the parasite.Native Cutthroat Trout fact sheet
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Cysticercosis
Contact Information
Email: Dan.kowalski@state.co.us
Phone: (970) 252-6008
Education
- M.S., Fishery Biology — Colorado State University, 2002
- B.S., Wildlife and Fisheries Science, Forest Science Minor — The Pennsylvania State University, 1999
Current or Recent Positions
- Aquatic Research Scientist — Colorado Parks and Wildlife, 2012-Present
- Aquatic Biologist — Colorado Parks and Wildlife, 2003-2012
- Research Associate — Colorado Cooperative Fish and Wildlife Research Unit, 2003
- Aquatic Technician — Colorado Parks and Wildlife, 2002
Areas of Interest/Expertise
Stream ecology and factors influencing coldwater sport fisheries in Colorado Rivers
Current or Recent Research Projects
- Habitat use, ecology and emergence dynamics of the stonefly Pteronarcys californica
- Habitat use and ecology of mottled sculpin Cottus bairdi
- Effects of whitewater park development on invertebrate and native fish in the Uncompahgre and Colorado Rivers
- Effects of mosquito control insecticides on invertebrates in Colorado Rivers
- Evaluation of an electric barrier to reduce fish entrainment in the South Canal on the Gunnison River
- Effects of re-introducing the stonefly Pteronarcys californica on the invertebrate community of the Arkansas River
Publications and PresentationsKowalski, D. A., R. J. Cordes, T. B. Riepe, J. D. Drennan, and A. J. Treble. 2022. Prevalence and distribution of Renibacterium salmoninarum, causative agent of bacterial kidney disease, in wild trout fisheries in Colorado. Pages 151-157 in the Proceedings of Wild Trout Symposium XIII: Reducing the Gap between Science and Public Opinion. Kowalski, D. A., E. I. Gardunio, and C. A. Garvey. 2022. Evaluating the effects of an electric barrier on fish entrainment in an irrigation canal in Colorado. River Research and Applications 38(3): 539–547. doi:10.1002/rra.3915.Heinold, B. D., D. A. Kowalski, and R. B. Nehring. 2020. Estimating densities of larval Salmonflies (Pteronarcys californica) through multiple pass removal of post-emergent exuvia in Colorado rivers. PLOSONE 15(4). doi: 10.1371/journal.pone.0227088.Kowalski, D. A. and E. E. Richer. 2020. Quantifying the habitat preferences of the stonefly Pteronarcys californica in Colorado. River Research and Applications 36:2043-2050. doi: 10.1002/rra.3733.Walters, D. M., J. S. Wesner, R. E. Zuellig, D. A. Kowalski, and M. C. Kondratieff. 2018. Holy flux: spatial and temporal variation in massive pulses of emerging insect biomass from western U.S. rivers. Ecology 99(1): 238-240.
Walters, D.M., R.E. Zuellig, and D.A. Kowalski. 2014. Quantifying the emergence of giant stonefly (Pteronarcys californica) and its importance to terrestrial food webs in U.S. western rivers. Society for Freshwater Science. Portland, OR
Kowalski, D.A., E. Fetherman, and R.B. Nehring. 2012. Introduction of whirling disease resistant rainbow trout in the Gunnison River. 2012 Western Division American Fisheries Society Meeting, Jackson Hole, WY.
Kowalski, D.A., Schisler, G.J., and R.B. Nehring. 2009. Introduction of Myxobolus cerebralis resistant rainbow trout in the Gunnison River. Colorado-Wyoming Chapter American Fisheries Society, Fort Collins, Colorado
Kowalski, D.A. and G.J. Schisler. 2008. Introduction of Myxobolus cerebralis resistant rainbow trout in the Gunnison River. 2008 Whirling Disease Symposium, Denver, Colorado.
Kowalski D.A. and E.P. Bergersen. 2004. The toxicity of Bayluscide and TFM to Tubifex tubifex: implications for chemical control of the oligochaete host of Myxobolus cerebralis, the causative agent of whirling disease. North American Journal of Aquaculture 65(3): 171–178.
Kowalski, D.A. and E.P. Bergersen. 2002. The toxicity of Bayluscide and TFM to Tubifex tubifex: implications for chemical control of whirling disease. 2002 Whirling Disease Symposium, Denver, Colorado.
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Pronghorn
Elk
Deer
Adenovirus