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Mountain lions, also known as cougars or pumas, reign as Colorado's largest cat. However, in recent years, human and mountain lion interactions have increased, prompting research projects focused on testing potential management solutions and collecting information about mountain lion behavior and population dynamics. The results of this research will also help wildlife managers set harvest quotas.
[show more]Led ByMat Alldredge
Study AreaBoulder and Jefferson Counties
Project StatusCompleted - Read the June 2016 Wildlife Research Report.
Research Objectives
- To assess mountain lion population demographics, movements, habitat use, prey selectivity and human interactions along the urban-exurban Front Range.
- To assess conditioning techniques to keep mountain lions away from urban/exurban areas.
- To assess mountain lion response to relocation.
Project Description
Colorado Parks and Wildlife found that most people find value in maintaining Colorado's mountain lion population in a 2005 public opinion survey. However, concern is growing over increased human-mountain lion conflicts. As a result, CPW initiated a long-term study to test various management strategies to reduce conflict and to collect data on mountain lion populations.
Researchers focused the study on two management strategies: aversive conditioning, a method used to train mountain lions to stay away from urban/exurban areas, and relocation, a method that must be used if a mountain lion is found in a residential neighborhood.
Because most human-mountain lion interactions occurred in residential neighborhoods, researchers had few possibilities to implement conditioning techniques, thus its effectiveness as a management technique led to mixed results.
In the past, relocation has also shown mixed results, but renewed interest in this management technique prompted researchers to explore this method in more detail. Relocation if not planned properly, can result in subsequent conflicts or the animal's death. Therefore, a successful relocation requires a relocation site that is far enough from the problem area, has suitable prey, and is remote enough so that future conflicts do not occur.
To collect data on mountain lion feeding behaviors, researchers captured and outfitted mountain lions with GPS collars. These collars transmitted GPS coordinates for each cat every three hours, which allowed researchers to identify likely kill sites. GPS data also allowed researchers to collect data on mountain lion movement and habitat use.
Graduate students and professionals used the GPS data collected during this project to investigate other research questions related to mountain lion population demographics and feeding behavior. Summaries of these projects are listed below.
Mountain Lion Foraging in an Urban to Rural Landscape
This project aimed to collect data on mountain lion feeding practices. Using data from mountain lions with GPS collars, researchers determined when and where mountain lions killed their prey in relation to human development and habitat.
Modeling Movements of Mountain Lions
Researchers developed movement models and examined mountain lion GPS data for various movement patterns relative to roads, human density/activity, and other landscape/environmental features.
- Hanks, E.M., M.B. Hooten, and M.W. Alldredge. 2012. Continuous-Time Discrete-Space Models for animal movement data. Journal of Agricultural, Biological, and Environmental Statistics.
- Hooten, M.B., E.M. Hanks, D.S. Johnson, and M.W. Alldredge. (2013). Temporal variation and scale in movement-based resource selection functions. Statistical Methodology, In Press.
- Hooten, M.B., E.M. Hanks, D.S. Johnson, and M.W. Alldredge. (2013). Reconciling resource utilization and resource selection functions. Journal of Animal Ecology, DOI: 10.1111/1365-2656.12080.
Predator-Prey Dynamics in Relation to Chronic Wasting Disease and Scavenging Interactions at Mountain Lion Kill Sites
This project aimed to document how often scavengers, such as black bears or red foxes, try to steal mountain lion kills and how successful they are in the process. Using motion-sensor cameras, researchers determined the average time it took for competing scavengers to arrive at a kill site and if the scavenger was successful at driving away the mountain lion. In addition, if a mountain lion killed a deer, elk or moose, the carcass was tested for chronic wasting disease. This allowed researchers to test the theory that predators seek out sick, old and young prey.
The Use of Lures, Hair Snares, and Snow Tracking as Non-invasive Sampling Techniques to Detect and Identify Mountain Lions
This project aimed to test the use of non-invasive genetic sampling techniques to estimate population size, which is used to set harvest quotas, evaluate management practices and understand predator-prey dynamics. Researchers developed and evaluated snow tracking and hair snags for their potential use in non-invasive population sampling. The use of calls to lure mountain lions into a hair snag was a novel concept that has shown great potential for future use. CPW initiated a long-term project to build on this work work. [show more]One of only two salmonids native to Colorado, the mountain whitefish was historically found in just the Yampa and White River drainages in the northwestern part of the state. Alarming declines in the Yampa River in the late 1990s spurred interest in this relatively unstudied species. Similar declines were documented in almost every other state across the native range during the same time period, while other populations in neighboring drainages often remained robust.
Mountain Whitefish work group
A working group was established in January 2009, out of a gathering held in Silverthorne, Colorado to review what little we know about mountain whitefish and to direct future research efforts. To be included in this group and receive subsequent mailings, please contact kevin.rogers@state.co.us.
Documents of interest to group members include:
- Effects of whirling disease exposure on juvenile mountain whitefish
- Effect of irrigation diversions on the mountain whitefish population in the Big Lost River
- Big Lost ESA listing decision news release and Federal Register notice
- Mountain whitefish conservation and management plan for the Big Lost River Drainage, Idaho
- A preliminary study of the proposed whitefish transplanting in western Colorado waters (1938)
- Publication list
- Bibliography
Mountain Whitefish Research
Monitoring mountain whitefish populations
Biologists are using electrofishing and mark-recapture methods to evaluate mountain whitefish population size in Colorado drainages where fish are native (Yampa and White Rivers), as well as where these fish were relocated in the 1940s (Cache la Poudre and Colorado Rivers). Population monitoring is essential for evaluating the health of these fisheries.
Whirling disease and Mountain Whitefish
Though numerous studies have explored the sensitivity of various trout subspecies to whirling disease, little has been done with mountain whitefish despite being one of only two salmonids native to Colorado. Recent declines in mountain whitefish populations in the Yampa River have been blamed on predation by northern pike and drought-induced low river flows, particularly in the summer of 2002. However, whirling disease also invaded this drainage in the late 1990s. This study was conducted to examine the role whirling disease might have played in the decline of Yampa River mountain whitefish populations.
Vulnerability to whirling disease is being explored by raising captive mountain whitefish fry, exposing them to known quantities of the parasite, then evaluating survival and subsequent infection. This research is ongoing.
Water quality
The coincident decline of mountain whitefish populations during the drought experienced in the early part of this decade led biologists to believe that elevated water temperatures might have been at least partially responsible. Thermal tolerances of mountain whitefish fry are currently being studied at the Aquatic Toxicology Laboratory in Fort Collins.
In addition, sensitivity to several metals was evaluated in mountain whitefish embryo, larvae and fry. Acute and chronic toxicity tests results indicate that mountain whitefish are similar to other salmonids in their sensitivity to cadmium and zinc. However, whitefish were very sensitive to copper exposure. Additional details on toxicity test results can be found in the Water Pollution Studies Federal Aid Report (pages 10-22).
[show more]Hydrocarbon development
Movement ecology
<em>Odocoileus hemionus</em>
Oil and natural gas
Resource selection function
Wildlife
Hydrocarbon development
Movement ecology
<em>Odocoileus hemionus</em>
Oil and natural gas
Resource selection function
Wildlife
CPW website species profile: Mule Deer
Mule deer populations in Colorado have shown dramatic fluctuations since the 1960s. Beginning in the 1990s, some western Colorado mule deer herds demonstrated the most recent decline. As such, CPW focused research efforts on developing management techniques to increase the health and survival of mule deer, an economically and ecologically important game animal.
Mule Deer Research Projects:
[show more]Northwest Colorado
Wildlife management
Oil and gas development
Fact sheet
Northwest Colorado
Wildlife management
Oil and gas development
Fact sheet
Wildlife Researcher, Ungulates/Carnivores
Current or Recent Research Projects
- Evaluating Factors Influencing Elk Recruitment in Colorado
- Assessing Responses of Elk to Human Recreation in Colorado
- Spatiotemporal Effects of Human Recreation on Elk Behavior
Areas of Interest and ExpertiseMy research focuses on large mammal ecology and management, with an emphasis on spatial ecology, population dynamics, and predator-prey interactions.
Streaming VideosEmblems of the West
Select Publications
- Crews, S., N. D. Rayl, M. W. Alldredge, E. J. Bergman, C. R. Anderson Jr., E. H. VanNatta, J. D. Holbrook, and G. Bastille-Rousseau. 2025. Hierarchy in structuring of resource selection: understanding elk selection across space, time, and movement strategies. Ecology and Evolution 15:e71097. https://doi.org/10.1002/ece3.71097
- Crews, S., N. D. Rayl, M. W. Alldredge, E. J. Bergman, C. R. Anderson Jr., and G. Bastille-Rousseau. 2025. Drivers of spring migration phenology in Rocky Mountain elk. Scientific Reports 15:7807. https://doi.org/10.1038/s41598-025-91947-4
- Bastille-Rousseau, G., S. A. Crews, E. B. Donovan, M. E. Egan, N. T. Gorman, J. B. Pitman, A. M. Weber, E. M. Audia, M. R. Larreur, H. Manninen, S. Blake, M. W. Eihholz, E. Bergman, and N. D. Rayl. 2024. A multi‐property assessment of intensity of use provides a functional understanding of animal movement. Methods in Ecology and Evolution 15:345-357. doi.org/10.1111/2041-210X.14274
- Egan, M. E., N. T. Gorman, S. Crews, M. W. Eichholz, D. Skinner, P. E. Schlichting, N. D. Rayl, E. J. Bergman, E. H. Ellington, and G. Bastille-Rousseau. 2024. Estimating encounter-habitat relationships with scale-integrated resource selection functions. Journal of Animal Ecology 93:1036-1048. https://doi.org/10.1111/1365-2656.14133
- Rayl, N.D., J.A. Merkle, K.M. Proffitt, E.S. Almberg, J.D. Jones, J.A. Gude, and P.C. Cross. 2021. Elk migration influences the risk of disease spillover in the Greater Yellowstone Ecosystem. Journal of Animal Ecology 90:1264-1275. https://doi.org/10.1111/1365-2656.13452
- Rayl, N.D., K.M. Proffitt, E.S. Almberg, J.D. Jones, J.A. Merkle, J.A. Gude, and P.C. Cross. 2019. Modeling elk-to-livestock transmission risk to identify hotspots of brucellosis spillover. Journal of Wildlife Management 83:817-829. https://doi.org/10.1002/jwmg.21645
- Rayl, N.D., K.M. Proffitt, E.S. Almberg, J.D. Jones, J.A. Merkle, and P.C. Cross. 2018. Estimating the risk of elk-to-livestock brucellosis transmission in Montana. Montana Fish, Wildlife and Parks, Helena, MT, USA.
- Rayl, N.D., G. Bastille-Rousseau, J.F. Organ, M.A. Mumma, S.P. Mahoney, C.E. Soulliere, K.P. Lewis, R.D. Otto, D.L. Murray, L.P. Waits, and T.K. Fuller. 2018. Spatiotemporal heterogeneity in prey abundance and vulnerability shapes the foraging tactics of an omnivore. Journal of Animal Ecology 87:874-887. https://doi.org/10.1111/1365-2656.12810
- Morjan, M.D.*, N.D. Rayl*, P.W. Elkan, J.C. Deutsch, M.B. Henke, and T.K. Fuller. 2018. Armed conflict and development threatens some of Africa’s longest and largest ungulate migrations. Biodiversity and Conservation 27:365-380. https://doi.org/10.1007/s10531-017-1440-7 [*shared first authorship]
- Bastille-Rousseau, G., J.A. Schaefer, M.J.L. Peers, E.H. Ellington, M.A. Mumma, N.D. Rayl, S.P. Mahoney, and D.L. Murray. 2018. Climate change can alter predator-prey dynamics and population viability of prey. Oecologia 186:141-150. https://doi.org/10.1007/s00442-017-4017-y
- Mumma, M.A., J.D. Holbrook, N.D. Rayl, C.J. Zieminski, T.K. Fuller, J.F. Organ, S.P. Mahoney, and L.P. Waits. 2017. Examining spatial patterns of selection and use for an altered predator guild. Oecologia 185:725-735. https://doi.org/10.1007/s00442-017-3971-8
- Bastille-Rousseau, G., J.A. Schaefer, K.P. Lewis, M.A. Mumma, E.H. Ellington, N.D. Rayl, S.P. Mahoney, D. Pouliot, and D.L. Murray. 2016. Phase-dependent climate-predator interactions explain three decades of variation in neonatal caribou survival. Journal of Animal Ecology 85:445-456. https://doi.org/10.1111/1365-2656.12466
- Bastille-Rousseau, G., N.D. Rayl, E.H. Ellington, J.A. Schaefer, M.J.L. Peers, M.A. Mumma, S.P. Mahoney, and D.L. Murray. 2016. Temporal variation in habitat use, co-occurrence, and risk among generalist predators and a shared prey. Canadian Journal of Zoology 94:191-198. https://doi.org/10.1139/cjz-2015-0127
- Bastille-Rousseau, G., J.R. Potts, J.A. Schaefer, M.A. Lewis, E.H. Ellington, N.D. Rayl, S.P. Mahoney, and D.L. Murray. 2015. Unveiling trade-offs in resource selection of migratory caribou using a mechanistic movement model of availability. Ecography 38:1049-1059. https://doi.org/10.1111/ecog.01305
- Rayl, N.D., T.K. Fuller, J.F. Organ, J.E. McDonald, Jr., R.D. Otto, G. Bastille-Rousseau, C.E. Soulliere, and S.P. Mahoney. 2015. Spatiotemporal variation in the distribution of potential predators of a resource pulse: black bears and caribou calves in Newfoundland. Journal of Wildlife Management 79:1041-1050. https://doi.org/10.1002/jwmg.936 [Cover article]
- Rayl, N.D., T.K. Fuller, J.F. Organ, J.E. McDonald, Jr., R.D. Otto, and S.P. Mahoney. 2014. Den abandonment and transitional day bed use by black bears Ursus americanus in Newfoundland. Wildlife Biology 20:222-228. https://doi.org/10.2981/wlb.00020
- Rayl, N.D., T.K. Fuller, J.F. Organ, J.E. McDonald, Jr., S.P. Mahoney, C. Soulliere, S.E. Gullage, T. Hodder, F. Norman, T. Porter, G. Bastille-Rousseau, J.A. Schaefer, and D.L. Murray. 2014. Mapping the distribution of a prey resource: neonate caribou in Newfoundland. Journal of Mammalogy 95:328-339. https://doi.org/10.1644/13-MAMM-A-133.1
- Sitompul, A.F., C.R. Griffin, N.D. Rayl, and T.K. Fuller. 2013. Spatial and temporal habitat use of an Asian elephant in Sumatra. Animals 3:670-679. https://doi.org/10.3390/ani3030670
- Fuller, T.K., S.M. Matthews, S.S. Stevens, N.D. Rayl, C.J. Zieminski, A.R. Whiteley, P.R. Sievert, J.F. Organ, and M.W. Gabriel. 2010. Book review: Noninvasive survey methods for carnivores. Journal of Wildlife Diseases 46:1055-1058. https://doi.org/10.7589/0090-3558-46.3.1055
Education
- Ph.D., Wildlife, Fish & Conservation Biology – University of Massachusetts, 2017
- M.S., Wildlife, Fish & Conservation Biology – University of Massachusetts, 2012
- B.A., Philosophy – Haverford College, 2000
Current or Recent Positions
- Wildlife Researcher – Colorado Parks and Wildlife, 2018-Present
- Ecologist – U.S. Geological Survey, 2016-2018
Contact Information711 Independent AveGrand Junction, CO 81505
Email: nathaniel.rayl@state.co.usPhone: 970-255-6121 [show more]