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Type: Article
Subjects: Kernel density estimation
Space use
Spatial statistics
Utilization distribution
Type:Article
Subject:Kernel density estimation
Space use
Spatial statistics
Utilization distribution
Description:

Summary

  1. Analyses based on utilization distributions (UDs) have been ubiquitous in animal space use studies, largely because they are computationally straightforward and relatively easy to employ. Conventional applications of resource utilization functions (RUFs) suggest that estimates of UDs can be used as response variables in a regression involving spatial covariates of interest.
  2. It has been claimed that contemporary implementations of RUFs can yield inference about resource selection, although to our knowledge, an explicit connection has not been described.
  3. We explore the relationships between RUFs and resource selection functions from a hueristic and simulation perspective. We investigate several sources of potential bias in the estimation of resource selection coefficients using RUFs (e.g. the spatial covariance modelling that is often used in RUF analyses).
  4. Our findings illustrate that RUFs can, in fact, serve as approximations to RSFs and are capable of providing inference about resource selection, but only with some modification and under specific circumstances.
  5. Using real telemetry data as an example, we provide guidance on which methods for estimating resource selection may be more appropriate and in which situations. In general, if telemetry data are assumed to arise as a point process, then RSF methods may be preferable to RUFs; however, modified RUFs may provide less biased parameter estimates when the data are subject to location error.
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Type:Text
Subject:Cutthroat trout
Description:Abstract: The discovery of a distinct lineage of Cutthroat Trout in museum specimens collected from the San Juan basin precipitated an intensive search for any remaining extant populations across the putative native range of this fish. Tissue samples from every known Cutthroat Trout population in the basin were assembled and analyzed with molecular methods. Of these, eight waters harbored Cutthroat Trout with mitochondrial DNA markers that placed them in the San Juan clade (a monophyletic lineage closely aligned with another Colorado River Cutthroat Trout lineage native to the headwaters of the Colorado, Dolores, and Gunnison rivers). Analysis of nuclear DNA amplified fragment length polymorphism markers also suggested they were distinct, with no evidence of introgressive hybridization with Rainbow Trout or Yellowstone Cutthroat Trout. We recommend that morphological studies be conducted on these same fish to evaluate if they can be distinguished with morpho-meristic traits as well. In this report we discuss support for considering these fish as a distinct unit of biodiversity worthy of conservation, as well as the current status of these eight populations. [show more]
Type:Article
Subject:Fecal nitrogen
Forage quality
Migration
Mule deer
Normalized difference vegetation index
Description:Migratory ungulates exhibit recurring movements, often along traditional routes between seasonal ranges each spring and autumn, which allow them to track resources as they become available on the landscape. We examined the relationship between spring migration of mule deer (Odocoileus hemionus) and forage quality, as indexed by spatiotemporal patterns of fecal nitrogen and remotely sensed greenness of vegetation (Normalized Difference Vegetation Index; NDVI) in spring 2010 in the Piceance Basin of northwestern Colorado, USA. NDVI increased throughout spring, and was affected primarily by snow depth when snow was present, and temperature when snow was absent. Fecal nitrogen was lowest when deer were on winter range before migration, increased rapidly to an asymptote during migration, and remained relatively high when deer reached summer range. Values of fecal nitrogen corresponded with increasing NDVI during migration. Spring migration for mule deer provided a way for these large mammals to increase access to a high-quality diet, which was evident in patterns of NDVI and fecal nitrogen. Moreover, these deer “jumped” rather than “surfed” the green wave by arriving on summer range well before peak productivity of forage occurred. This rapid migration may aid in securing resources and seclusion from others on summer range in preparation for parturition, and to minimize detrimental factors such as predation, and malnutrition during migration. [show more]
Type:Text
Subject:Wildlife Conservation
Ecology
Description:Understanding factors regulating populations is a fundamental goal of population ecology. Life-history traits such as survival and fecundity are key vital rates responsible for population change and may vary across elevational gradients. At the upper end of this gradient, the alpine zone, populations are faced with extremely short growing seasons, unpredictable winter conditions dictated by snowpack, and the continued threat of habitat loss due to temperatures increasing beyond the range that defines these cold systems. To date, few studies have addressed population regulation of alpine-endemic species in the context of the aforementioned factors. I used long-term demographic data collected over a 51-year period at two study sites (Mt. Evans and Trail Ridge) together with a contemporary field study (2013- 2015) at three sites (Mt. Evans, Trail Ridge, and Mesa Seco) to examine factors regulating alpine-endemic white-tailed ptarmigan (Lagopus leucura) in Colorado. [show more]
Type:Article
Subject:Natural gas development
<em>Odocoileus hemionus</em>
Survival
Description:Natural gas development is increasing across North America and causing concern over the potential impacts on wildlife populations and their habitat, particularly for ungulate species. Understanding how this development impacts reproductive success metrics that are influential for ungulate population dynamics is important to guide management of ungulates. However, the influences of natural gas development on reproductive success metrics of mule deer Odocoileus hemionus have not been studied. We used statistical models to examine the influence of natural gas development and temporal factors on reproductive success metrics of mule deer in the Piceance Basin, northwest Colorado during 2012–2014. We focused on study areas with relatively high or low levels of natural gas development. Pregnancy and in utero fetal rates were high and statistically indistinguishable between study areas. Fetal survival rates increased over time and survival was lower in the high versus low development study areas in 2012 possibly influenced by drought coupled with habitat loss and fragmentation associated with development. Our novel results suggest managers should be concerned with the influences of development on fetal survival, particularly during extreme environmental conditions (e.g. drought) and our results can be used to guide development planning and/or mitigation. Developers and wildlife managers should continue to collaborate on development planning, such as implementing habitat treatments to improve forage availability and quality, minimizing disturbance to hiding and foraging habitat particularly during parturition, directional drilling to minimize pad disturbance density to increase fetal survival in developed areas. [show more]
Subject:Whirling disease
Rainbow Trout
Description:Whirling disease-resistant rainbow trout development and post-stocking survival and recruitment evaluations in the Upper Colorado River
Description:

Led By

Lake and Reservoir Researchers

Study Area

Select reservoirs

Project Status

Ongoing

Research Objectives

  • Characterize and quantify interactions among key fish predators and prey in select reservoirs when required for addressing existing or emerging management uncertainties.

Project Description

Understanding how different species interact is central to sport fisheries management. For example, if predation on stocked fish intended for anglers (e.g., rainbow trout) limits development of a recreational fishery, modifying stocking practices (e.g., size of fish or timing) or other actions may be needed to improve the survival of stocked fish.

Alternatively, the recruitment success, growth and survival of sport fish sustained through natural reproduction rather than stocking can depend on numerous factors such as fluctuations in water levels or primary forage fish populations. Understanding relationships among factors helps identify potential management actions for improving sport fish growth and survival when necessary.

Lake and Reservoir Researchers use a suite of sampling methods and analytical tools to characterize reservoir food webs and predator-prey interactions when detailed assessments are needed to address management uncertainties. Sampling methods include various types of nets to catch different life-stages of fish occupying near- and offshore habitats to characterize spatial-temporal interactions among species. Analytical tools such as stable isotopes (chemical composition of fish), bioenergetics models, and population dynamics models are used to map food webs and quantify the influence of different species on others.

Current research involves investigating interactions between rainbow smelt and walleye in Horsetooth Reservoir (northeast Colorado). Rainbow smelt, a small-bodied forage fish, were introduced in 1983 to provide a prey base for walleye and smallmouth bass. The population of smelt can fluctuate dramatically. When highly abundant in the reservoir, growth of sport fish greatly improves, but they also limit natural reproduction by walleye through competition with and/or predation on larval/juvenile walleye. This research aims to identify management strategies for balancing the advantages of smelt with their disadvantages as the primary forage fish in the Horsetooth Reservoir food web.

Associated Publications

Hansen, A.G., J.S. Thompson, L.N. Hargis, D. Brauch, and B.M. Johnson. 2019. Predatory threat of introduced yellow perch in a salmonid dominated reservoir food web. North American Journal of Fisheries Management 39:172-190.

Johnson, B.M., W.M. Pate, and A.G. Hansen. 2017. Energy density and dry matter content in fish: new observations and an evaluation of some empirical models. Transactions of the American Fisheries Society 146:1262-1278.

Johnson, B.M., J.M. Lepak, and B.A. Wolff. 2015. Effects of prey assemblage on mercury bioaccumulation in a piscivorous sport fish. Science of the Total Environment 506-507:330-337.

Lepak, J.M., C.N. Cathcart, and W.L. Stacy. 2014. Tiger muskellunge predation upon stocked sport fish intended for recreational fisheries. Lake and Reservoir Management 30:250-257.

Lepak, J.M., A.G. Hansen, E.T. Cristan, and D. Williams. 2023. Rainbow smelt (Osmerus mordax) influence on walleye (Sander vitreus) recruitment failure: mitochondrial DNA evidence supporting the predation hypothesis. Journal of Fish Biology 103:1543-1548.

Lepak, J.M., A.G. Hansen, B.M. Johnson, K. Battige, E.T. Cristan, C.J. Farrell, W.M. Pate, K.B. Rogers, A.J. Treble, and T.W. Walsworth. In press. Cyclical multi-trophic-level responses to a volatile, introduced forage fish: learning from four decades of food web observation to inform management. Fisheries.

Pate, W.M., B.M. Johnson, J.M. Lepak, and D. Brauch. 2014. Managing for coexistence of kokanee and trophy lake trout in a montane reservoir. North American Journal of Fisheries Management 34:908-922.

Wolff, B.A., B.M. Johnson, and J.M. Lepak. 2017. Changes in sport fish mercury concentrations from food web shifts suggest partial decoupling from mercury loading in two Colorado reservoirs. Archives of Environmental Contamination and Toxicology 72:167-177.Predation on Stocked Fish fact sheetFish Bioenergetics Research fact sheet

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Description:

Led ByEric Bergman, Nathaniel Rayl

Study Areas

  • Avalanche Creek elk herd (DAU E-15)
  • Bear’s Ears elk herd (DAU E-2) 

Project StatusOngoing

Research Objectives

  • To assess how elk respond to human recreation
  • To evaluate the influence of human recreation on elk distribution
  • To estimate calf and adult female survival and cause-specific mortality rates
  • To quantify pregnancy rates and nutritional condition
  • To evaluate factors influencing survival, pregnancy rates, and nutritional condition

Project DescriptionIn Colorado, outdoor recreation contributes 511,000 jobs, $62.5 billion in economic output, and $9.4 billion in local, state, and federal tax revenue. Thus, the economies of Colorado, its counties, and its communities, rely on managing the landscape for a multitude of outdoor recreational opportunities.

The sensitivity of elk to human presence and human activity has been a topic of interest for many decades. In Colorado, increasing public concerns over human recreational use have coincided with declines in elk productivity, but a direct relationship to this activity in Colorado remains unaddressed. This research aims to better understand the influence of human recreation on elk behavior and distribution.

ReportsResponse of Elk To Human Recreation at Multiple Scales: Demographic Shifts and Behaviorally Mediated Fluctuations in Local Abundance (2019-Current)

PublicationsCrews, S., N.D. Rayl, M.W. Alldredge, E.J. Bergman, C.R. Anderson Jr., E.H. VanNatta, J.D. Holbrook, and G. Bastille-Rousseau. 2025. Hierarchy in structuring of resource selection: understanding elk selection across space, time, and movement strategies. Ecology and Evolution 15:e71097.

Crews, S., N. D. Rayl, M. W. Alldredge, E. J. Bergman, C. R. Anderson Jr., and G. Bastille-Rousseau. 2025. Drivers of spring migration phenology in Rocky Mountain elk. Scientific Reports 15:7807Bastille-Rousseau, G., S. A. Crews, E. B. Donovan, M. E. Egan, N. T. Gorman, J. B. Pitman, A. M. Weber, E. M. Audia, M. R. Larreur, H. Manninen, S. Blake, M. W. Eihholz, E. Bergman, and N. D. Rayl. 2024. A multi‐property assessment of intensity of use provides a functional understanding of animal movement. Methods in Ecology and Evolution 15:345-357. Egan, M. E., N. T. Gorman, S. Crews, M. W. Eichholz, D. Skinner, P. E. Schlichting, N. D. Rayl, E. J. Bergman, E. H. Ellington, and G. Bastille-Rousseau. 2024. Estimating encounter-habitat relationships with scale-integrated resource selection functions. Journal of Animal Ecology 93:1036-1048.

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Subject:Fish habitat manipulation
Description:A presentation on manipulating fish habitat to increase trout populations in a stream